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Spg024882 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024882
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:8469644..8479043
RNA-Seq ExpressionSpg024882
SyntenySpg024882
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-1951.28Show/hide
Query:  RPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVFMF---------IKFNVQEGQRVSLEED
        RPRGNR+SLQT ELDKT                 VEIELPVPDTLP SAESS ++SSTW+EL  E VH+   + F         + FNV  G    +  D
Subjt:  RPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVFMF---------IKFNVQEGQRVSLEED

Query:  DVRWLHAIFWAKPAGGP
        +V WLHA+FWAK AGGP
Subjt:  DVRWLHAIFWAKPAGGP

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.3e-2157.29Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVF------MFIKFNVQEGQRVSLEEDDVRWLHAIFWAKPAGGP
        PRGNR +L T +LDKTVEIELPVPDTLP SAESS+++SSTW+ELY ESVH+  +F          +   EG    +  DD+ WLHA+FWAK AG P
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVF------MFIKFNVQEGQRVSLEEDDVRWLHAIFWAKPAGGP

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]9.9e-1851.75Show/hide
Query:  PRGNRSSLQTRELDKT---------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHI---------VNVFMFIKFNVQEGQRVSLEEDDVR
        PRGNR SLQTRELDKT               V IELPVPD LP SAESS ++SSTW+ELY ESVH+         V   + + FNV  G    +  DDV 
Subjt:  PRGNRSSLQTRELDKT---------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHI---------VNVFMFIKFNVQEGQRVSLEEDDVR

Query:  WLHAIFWAKPAGGP
        WLHA+F AK  GGP
Subjt:  WLHAIFWAKPAGGP

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]9.9e-1850.43Show/hide
Query:  FFRPRGNRSSLQTRELDKTV---------------EIELPVPDTLPASAESSRTSSSTWVELYIESVHI---------VNVFMFIKFNVQEGQRVSLEED
        +  PRGNR SLQT ELDKTV                IELPVPDTLP SAESS ++SSTW+ELY ESVH+         V   + + FNV  G    +  D
Subjt:  FFRPRGNRSSLQTRELDKTV---------------EIELPVPDTLPASAESSRTSSSTWVELYIESVHI---------VNVFMFIKFNVQEGQRVSLEED

Query:  DVRWLHAIFWAKPAGGP
        DV WLHA+F AK  GGP
Subjt:  DVRWLHAIFWAKPAGGP

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-1650.44Show/hide
Query:  PRGNRSSLQTRELDK-----------------TVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVF------MFIKFNVQEGQRVSLEEDDVRW
        PRGNR  LQT ELDK                  VEIELP+PDTLP SAESS ++SSTW+ELY ESVH+  +F          +   EG    +  DDV W
Subjt:  PRGNRSSLQTRELDK-----------------TVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVF------MFIKFNVQEGQRVSLEEDDVRW

Query:  LHAIFWAKPAGGP
        LHAIF AK AGGP
Subjt:  LHAIFWAKPAGGP

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein6.9e-1750.44Show/hide
Query:  PRGNRSSLQTRELDK-----------------TVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVF------MFIKFNVQEGQRVSLEEDDVRW
        PRGNR  LQT ELDK                  VEIELP+PDTLP SAESS ++SSTW+ELY ESVH+  +F          +   EG    +  DDV W
Subjt:  PRGNRSSLQTRELDK-----------------TVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVF------MFIKFNVQEGQRVSLEEDDVRW

Query:  LHAIFWAKPAGGP
        LHAIF AK AGGP
Subjt:  LHAIFWAKPAGGP

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.1e-1951.28Show/hide
Query:  RPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVFMF---------IKFNVQEGQRVSLEED
        RPRGNR+SLQT ELDKT                 VEIELPVPDTLP SAESS ++SSTW+EL  E VH+   + F         + FNV  G    +  D
Subjt:  RPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVFMF---------IKFNVQEGQRVSLEED

Query:  DVRWLHAIFWAKPAGGP
        +V WLHA+FWAK AGGP
Subjt:  DVRWLHAIFWAKPAGGP

A0A5A7UAH6 CCHC-type domain-containing protein3.5e-2157.29Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVF------MFIKFNVQEGQRVSLEEDDVRWLHAIFWAKPAGGP
        PRGNR +L T +LDKTVEIELPVPDTLP SAESS+++SSTW+ELY ESVH+  +F          +   EG    +  DD+ WLHA+FWAK AG P
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVF------MFIKFNVQEGQRVSLEEDDVRWLHAIFWAKPAGGP

A0A5A7UT17 CCHC-type domain-containing protein4.8e-1851.75Show/hide
Query:  PRGNRSSLQTRELDKT---------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHI---------VNVFMFIKFNVQEGQRVSLEEDDVR
        PRGNR SLQTRELDKT               V IELPVPD LP SAESS ++SSTW+ELY ESVH+         V   + + FNV  G    +  DDV 
Subjt:  PRGNRSSLQTRELDKT---------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHI---------VNVFMFIKFNVQEGQRVSLEEDDVR

Query:  WLHAIFWAKPAGGP
        WLHA+F AK  GGP
Subjt:  WLHAIFWAKPAGGP

A0A5D3CJX3 CCHC-type domain-containing protein4.8e-1850.43Show/hide
Query:  FFRPRGNRSSLQTRELDKTV---------------EIELPVPDTLPASAESSRTSSSTWVELYIESVHI---------VNVFMFIKFNVQEGQRVSLEED
        +  PRGNR SLQT ELDKTV                IELPVPDTLP SAESS ++SSTW+ELY ESVH+         V   + + FNV  G    +  D
Subjt:  FFRPRGNRSSLQTRELDKTV---------------EIELPVPDTLPASAESSRTSSSTWVELYIESVHI---------VNVFMFIKFNVQEGQRVSLEED

Query:  DVRWLHAIFWAKPAGGP
        DV WLHA+F AK  GGP
Subjt:  DVRWLHAIFWAKPAGGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAAGACGGGACGCAGGATCCTACCCAAAGTCAATCTAAAAGGGATCCAGTACCCCAAGAGGGTAGCAGAGAACC
TCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGAATCGCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAAC
TAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTCTGTT
CATATTGTAAATGTTTTTATGTTTATCAAGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTTGGGCTAAGCC
AGCAGGTGGTCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAAGACGGGACGCAGGATCCTACCCAAAGTCAATCTAAAAGGGATCCAGTACCCCAAGAGGGTAGCAGAGAACC
TCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGAATCGCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAAC
TAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTCTGTT
CATATTGTAAATGTTTTTATGTTTATCAAGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTTGGGCTAAGCC
AGCAGGTGGTCCGTGA
Protein sequenceShow/hide protein sequence
MPPRTSRRRRQNQDGTQDPTQSQSKRDPVPQEGSREPRICVVCVRGNSGQIGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPASAESSRTSSSTWVELYIESV
HIVNVFMFIKFNVQEGQRVSLEEDDVRWLHAIFWAKPAGGP