; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024883 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024883
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold12:13521048..13524054
RNA-Seq ExpressionSpg024883
SyntenySpg024883
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.1e-1962.77Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL
        +SM   EEENQC  S   + SAF+RLS+STSKK R STS FDRLK+TNDQ QR+M +L+ K F E + D K+ S VPSRMKRK  V INTEGSL
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL

KAA0045440.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.0e-1956.86Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSK
        +SM   EE+NQC   I T+ S F+RLS+STSKK+R STS FDRLK+TNDQ QR+M +L+ K F E + D K+ S +PSRMKRK YV INTEG +  LL  
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSK

Query:  FE
         +
Subjt:  FE

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]9.1e-1962.77Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL
        +SM   EEENQC  S   + SAF+RLS+STSKK R STS FDRLK+TNDQ QR+M +L+ K F E + D K+ S VPSRMKRK  V INTEGSL
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.1e-1947.22Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSK
        +SM   EEENQC   I T+ S F+RLS+STSKK R STSVFDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK  V INTEG++  LL  
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSK

Query:  FEGLRCFAAVPSFQVRRF-----GSLQFLLLLSKLRIRDFAVAS
         +  R        Q R F       + F +    L++RD + +S
Subjt:  FEGLRCFAAVPSFQVRRF-----GSLQFLLLLSKLRIRDFAVAS

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-1862.77Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL
        +SM   EEENQC  SIST+ SAF+RLS+STSKK R STSVF+RLK+TNDQ QR+  +L+ K F E + D K+ S VPS MKR   V INTEGSL
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein4.4e-1962.77Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL
        +SM   EEENQC  S   + SAF+RLS+STSKK R STS FDRLK+TNDQ QR+M +L+ K F E + D K+ S VPSRMKRK  V INTEGSL
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL

A0A5A7TQK6 Retrotransposon gag protein3.4e-1956.86Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSK
        +SM   EE+NQC   I T+ S F+RLS+STSKK+R STS FDRLK+TNDQ QR+M +L+ K F E + D K+ S +PSRMKRK YV INTEG +  LL  
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSK

Query:  FE
         +
Subjt:  FE

A0A5A7V7A0 Retrotransposon gag protein4.4e-1947.22Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSK
        +SM   EEENQC   I T+ S F+RLS+STSKK R STSVFDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK  V INTEG++  LL  
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSK

Query:  FEGLRCFAAVPSFQVRRF-----GSLQFLLLLSKLRIRDFAVAS
         +  R        Q R F       + F +    L++RD + +S
Subjt:  FEGLRCFAAVPSFQVRRF-----GSLQFLLLLSKLRIRDFAVAS

A0A5D3BBF9 Gag protease polyprotein4.4e-1962.77Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL
        +SM   EEENQC  S   + SAF+RLS+STSKK R STS FDRLK+TNDQ QR+M +L+ K F E + D K+ S VPSRMKRK  V INTEGSL
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL

A0A5D3BLW3 Retrotransposon gag protein5.8e-1960.64Show/hide
Query:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL
        +SM   EE+NQC  S  T+ SAF+RLS+STSKK R STS FDR+K+ NDQ QR+M +L+ K F E + D K+ S VPSRMKRK +V INTEGSL
Subjt:  MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCATCTCCACTCAACCTTCAGCTTTTCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCAAAGAAAGATGGACAACTTAGAAGTGAAACTGTTCGATGAAGTAAGTAGTGACAAGAAGCTTCAAA
GTATTGTCCCGTCACGTATGAAAAGGAAGTTCTATGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTTGAAGGTTTACGTTGCTTCGCTGCAGTT
CCTTCTTTCCAAGTTCGAAGGTTCGGTTCGCTGCAGTTCCTTCTCCTTCTCTCCAAGTTAAGAATCCGAGATTTCGCGGTAGCTTCGCGACGCTACGACCAATTTTTGCC
TTATTTAAAGATTGCGATTAGGGCTTTTATGGGGGACTTTTTTGGTGACTTTGGAGCCGTAAAACAGAGAGAAAAGGCTGCTGGAAGGCTGAAGCAAGTGGAGAAAAGTG
GATTTCAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGTGCGGTCTCGGCTCACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCATCTCCACTCAACCTTCAGCTTTTCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCAAAGAAAGATGGACAACTTAGAAGTGAAACTGTTCGATGAAGTAAGTAGTGACAAGAAGCTTCAAA
GTATTGTCCCGTCACGTATGAAAAGGAAGTTCTATGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTTGAAGGTTTACGTTGCTTCGCTGCAGTT
CCTTCTTTCCAAGTTCGAAGGTTCGGTTCGCTGCAGTTCCTTCTCCTTCTCTCCAAGTTAAGAATCCGAGATTTCGCGGTAGCTTCGCGACGCTACGACCAATTTTTGCC
TTATTTAAAGATTGCGATTAGGGCTTTTATGGGGGACTTTTTTGGTGACTTTGGAGCCGTAAAACAGAGAGAAAAGGCTGCTGGAAGGCTGAAGCAAGTGGAGAAAAGTG
GATTTCAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGTGCGGTCTCGGCTCACCTAG
Protein sequenceShow/hide protein sequence
MSMVATEEENQCSVSISTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFYVLINTEGSLKFLLSKFEGLRCFAAV
PSFQVRRFGSLQFLLLLSKLRIRDFAVASRRYDQFLPYLKIAIRAFMGDFFGDFGAVKQREKAAGRLKQVEKSGFQGFVRGDRDGDVRSRLT