; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024940 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024940
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationscaffold12:11280141..11281049
RNA-Seq ExpressionSpg024940
SyntenySpg024940
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR005679 - Ribosomal protein S12, bacterial-type
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RZC70923.1 hypothetical protein C5167_034128 [Papaver somniferum]2.3e-6174.59Show/hide
Query:  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAV
        M+SKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV
Subjt:  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAV

Query:  EVKDRPQGRSSAL------------------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR
         VKDR QGRSSAL                              ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDESR
Subjt:  EVKDRPQGRSSAL------------------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR

RZC88934.1 hypothetical protein C5167_030630 [Papaver somniferum]1.8e-6675.65Show/hide
Query:  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAV
        M+SKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV
Subjt:  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAV

Query:  EVKDRPQGRSSAL------------------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDL
         VKDR QGRSSAL                              ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDL
Subjt:  EVKDRPQGRSSAL------------------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDL

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]5.9e-5794.49Show/hide
Query:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        MEEGRRFSNEEK+PM+SKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  DVRYHIVRGTLDAVEVKDRPQGRSSAL
         VRYHIVRGTLDAV VKDR QGRSSAL
Subjt:  DVRYHIVRGTLDAVEVKDRPQGRSSAL

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]2.7e-5491.34Show/hide
Query:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        MEEGRRFSNEEK+PM+SKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPK  NSALRKV+RVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  DVRYHIVRGTLDAVEVKDRPQGRSSAL
         VRYHIVRGTLDAV VKDR QGRSSAL
Subjt:  DVRYHIVRGTLDAVEVKDRPQGRSSAL

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]9.4e-5591.34Show/hide
Query:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        MEEGRRFSNEEK+PM+SKELNEEPYEVKIS TVLSSGSKGDLS+NFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQE+ VVLVRG RVKDLP
Subjt:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  DVRYHIVRGTLDAVEVKDRPQGRSSAL
        +VRYHIVRGTLDAV VKDR QGRSSAL
Subjt:  DVRYHIVRGTLDAVEVKDRPQGRSSAL

TrEMBL top hitse value%identityAlignment
A0A4D6LVH2 Ribosomal protein S72.1e-5283.82Show/hide
Query:  LSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNPSR
        + SGSKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRS   I   + 
Subjt:  LSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNPSR

Query:  KGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR
        KG +     KVSKQNSILD IDTYRILWKAVFDESR
Subjt:  KGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR

A0A4Y7KC21 Uncharacterized protein1.1e-6174.59Show/hide
Query:  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAV
        M+SKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV
Subjt:  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAV

Query:  EVKDRPQGRSSAL------------------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR
         VKDR QGRSSAL                              ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDESR
Subjt:  EVKDRPQGRSSAL------------------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR

A0A5H2Y3L6 Ribosomal protein S7p/S5e family protein (Fragment)6.5e-5464.95Show/hide
Query:  SSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSS---------
        +SGSKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRSS         
Subjt:  SSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSS---------

Query:  --------------------------------------------------ALISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR
                                                            ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDES+
Subjt:  --------------------------------------------------ALISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR

A0A6J1F0L1 uncharacterized protein LOC1114383942.8e-5794.49Show/hide
Query:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        MEEGRRFSNEEK+PM+SKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  DVRYHIVRGTLDAVEVKDRPQGRSSAL
         VRYHIVRGTLDAV VKDR QGRSSAL
Subjt:  DVRYHIVRGTLDAVEVKDRPQGRSSAL

A0A6N2NH77 Ribosomal_S7 domain-containing protein3.3e-5367.21Show/hide
Query:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        ++EGR FS +EK PM+SKELNEEPYE         SGSKGDLSVNF TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRG  ++  P
Subjt:  MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  --------DVRYHIVRGTLDAVEVKDRPQGRSSALISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEG
                D ++  +    +    + +  G     ISNPSRK RETDTQFKVSKQNSIL+LIDTYRILWKAVFDESRMYGLEG
Subjt:  --------DVRYHIVRGTLDAVEVKDRPQGRSSALISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEG

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic6.1e-4186Show/hide
Query:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP
        T + SGSKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRS   +  P
Subjt:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP

A4QJX7 30S ribosomal protein S12-B, chloroplastic1.0e-3581.72Show/hide
Query:  KGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP
        +G  +  +STITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRS   +  P
Subjt:  KGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP

Q0G9J5 30S ribosomal protein S12, chloroplastic3.8e-3593.75Show/hide
Query:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL
        TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRSSAL
Subjt:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic3.8e-3593.75Show/hide
Query:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL
        TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRSSAL
Subjt:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic3.8e-3593.75Show/hide
Query:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL
        TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRSSAL
Subjt:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein2.7e-2058.97Show/hide
Query:  STITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRS
        ST TPKKPNSA RK+++VRL++  +I A+IPG GHN QEHS VL+RGGRVKD P V+ H +RG  D + +  R +GRS
Subjt:  STITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRS

ATCG00065.1 ribosomal protein S12A6.1e-3688.1Show/hide
Query:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP
        TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRS   +  P
Subjt:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP

ATCG00905.1 ribosomal protein S12C6.1e-3688.1Show/hide
Query:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP
        TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRS   +  P
Subjt:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP

ATCG01230.1 ribosomal protein S12B6.1e-3688.1Show/hide
Query:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP
        TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRS   +  P
Subjt:  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP

ATMG00980.1 Ribosomal protein S12/S23 family protein2.7e-2058.97Show/hide
Query:  STITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRS
        ST TPKKPNSA RK+++VRL++  +I A+IPG GHN QEHS VL+RGGRVKD P V+ H +RG  D + +  R +GRS
Subjt:  STITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGAATCCAATGAGTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCAAGTACGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTTCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTG
CTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACC
CTAGATGCTGTCGAAGTAAAGGATCGTCCACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACA
GAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTGCCCTCTCGGGGACTTGCTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGAATCCAATGAGTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCAAGTACGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTTCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTG
CTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACC
CTAGATGCTGTCGAAGTAAAGGATCGTCCACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACA
GAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTGCCCTCTCGGGGACTTGCTT
AA
Protein sequenceShow/hide protein sequence
MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGT
LDAVEVKDRPQGRSSALISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLPSRGLA