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Spg024952 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024952
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNERD domain-containing protein
Genome locationscaffold12:15338802..15340964
RNA-Seq ExpressionSpg024952
SyntenySpg024952
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605718.1 hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sororia]2.1e-2779.52Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK
        M+ EILCGFIAFR+LRRFF  RDE+EIE+SDSNALFA ASRLEK+Y GKIFVGLRIPDADTGLRQSIDMVLVTKG+ +  + K
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK

XP_004148346.1 uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus]1.8e-2983.13Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK
        MWAEILCGF+AFRVLRRFFF RDEMEIE+ DS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKG+ +    K
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK

XP_022157167.1 uncharacterized protein LOC111023945 [Momordica charantia]8.7e-2972.92Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKG-------KNIETVAKLSVGSS
        MWAEILCGFIAFRVLRRFF  +DEMEIE+SDSNA+FAAASRLEKLYGG++F+GLRIPDADTG RQSIDMVLVTKG       KN+  +  +S   S
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKG-------KNIETVAKLSVGSS

XP_031738513.1 uncharacterized protein LOC101206635 isoform X2 [Cucumis sativus]1.8e-2983.13Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK
        MWAEILCGF+AFRVLRRFFF RDEMEIE+ DS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKG+ +    K
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK

XP_038888004.1 uncharacterized protein LOC120077943 [Benincasa hispida]1.8e-2960.28Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAKLSVGSSGGGKGTSVGRV
        MWAEILCGF+AFRVLRRFFF RDEMEIE+ DSNALFA ASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKG+ +    K   G        S    
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAKLSVGSSGGGKGTSVGRV

Query:  GDGVKAGGVGGLGIGNLR---LCSETFFWQRSPVPCGGGLS
        GDG +   +    +   R   L  E++F +R  V   G LS
Subjt:  GDGVKAGGVGGLGIGNLR---LCSETFFWQRSPVPCGGGLS

TrEMBL top hitse value%identityAlignment
A0A061EYI0 Plasma membrane isoform 13.5e-2368.42Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGK
        MW EI+CG I +R+ RRFF+  D +E+E+SDSNA+F+ A+RLEKLYGGK++VGL IPDADTG RQ+IDMVLVTKG+
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGK

A0A0A0LKG9 NERD domain-containing protein8.5e-3083.13Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK
        MWAEILCGF+AFRVLRRFFF RDEMEIE+ DS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKG+ +    K
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK

A0A6J1DTU9 uncharacterized protein LOC1110239454.2e-2972.92Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKG-------KNIETVAKLSVGSS
        MWAEILCGFIAFRVLRRFF  +DEMEIE+SDSNA+FAAASRLEKLYGG++F+GLRIPDADTG RQSIDMVLVTKG       KN+  +  +S   S
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKG-------KNIETVAKLSVGSS

A0A6J1H014 uncharacterized protein LOC1114591801.0e-2779.52Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK
        M+ EILCGFIAFR+LRRFF  RDE+EIE+SDSNALFA ASRLEK+Y GKIFVGLRIPDADTGLRQSIDMVLVTKG+ +  + K
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK

A0A6J1K1B0 uncharacterized protein LOC1114908113.0e-2778.31Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK
        MW EILCGFIAFR+LRRFF   D +EIE+SDSNALFA ASRLEK+Y GKIFVGLRIPDADTGLRQSIDMVLVTKG+ +  + K
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).4.5e-2362.67Show/hide
Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKG
        MW EI+CG + ++++RRFF+  +  ++E+SDS ALF+ A RLEKLYGGK +VGLRIPDADT  RQ ID+VLVTKG
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCTGAGATACTCTGTGGTTTCATAGCGTTTAGAGTGCTCAGGCGATTCTTTTTTGGAAGGGATGAAATGGAGATCGAGAGCTCTGATTCTAATGCCCTATTCGC
CGCAGCTTCTAGACTAGAAAAGCTTTATGGTGGAAAAATTTTTGTGGGACTCCGAATTCCAGATGCTGACACTGGTTTGCGGCAGAGTATTGATATGGTGCTTGTAACCA
AAGGTAAGAACATTGAAACTGTTGCGAAACTTTCTGTGGGAAGCAGTGGAGGAGGGAAAGGGACCTCAGTTGGTCGGGTAGGAGATGGTGTCAAAGCTGGTGGAGTTGGG
GGGTTAGGCATTGGGAACTTGAGGTTATGTAGTGAGACTTTTTTTTGGCAAAGGAGCCCAGTGCCATGTGGTGGAGGGTTATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCTGAGATACTCTGTGGTTTCATAGCGTTTAGAGTGCTCAGGCGATTCTTTTTTGGAAGGGATGAAATGGAGATCGAGAGCTCTGATTCTAATGCCCTATTCGC
CGCAGCTTCTAGACTAGAAAAGCTTTATGGTGGAAAAATTTTTGTGGGACTCCGAATTCCAGATGCTGACACTGGTTTGCGGCAGAGTATTGATATGGTGCTTGTAACCA
AAGGTAAGAACATTGAAACTGTTGCGAAACTTTCTGTGGGAAGCAGTGGAGGAGGGAAAGGGACCTCAGTTGGTCGGGTAGGAGATGGTGTCAAAGCTGGTGGAGTTGGG
GGGTTAGGCATTGGGAACTTGAGGTTATGTAGTGAGACTTTTTTTTGGCAAAGGAGCCCAGTGCCATGTGGTGGAGGGTTATCGTGA
Protein sequenceShow/hide protein sequence
MWAEILCGFIAFRVLRRFFFGRDEMEIESSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGKNIETVAKLSVGSSGGGKGTSVGRVGDGVKAGGVG
GLGIGNLRLCSETFFWQRSPVPCGGGLS