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Spg025024 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025024
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:10642255..10644366
RNA-Seq ExpressionSpg025024
SyntenySpg025024
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]3.5e-1175Show/hide
Query:  RPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI
        RPRGNR SLQT +L KTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+
Subjt:  RPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.6e-1176.47Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI
        PRGNR +L T +L KTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]3.5e-1174.51Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI
        PRGNR SLQ  +L KTVEIELP+PDTLPTS+ESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.1e-1245.53Show/hide
Query:  VYKLNQKLYLEKDKGQPRICVVFVRGISGQIGLESHFHFFR--------------PRGNRSSLQTRELAKT-----------------VEIELPVPDTLP
        V+K NQKLYL +   +PRI      G      L   F F +              PRGNRSSLQT EL KT                 VEIELPVPDTLP
Subjt:  VYKLNQKLYLEKDKGQPRICVVFVRGISGQIGLESHFHFFR--------------PRGNRSSLQTRELAKT-----------------VEIELPVPDTLP

Query:  TSAESSITSSSTWVELYIESVHI
        TSAES  ++SSTW+ELY E VH+
Subjt:  TSAESSITSSSTWVELYIESVHI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.2e-1178.43Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI
        PRGNR S QT +L KTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.7e-1175Show/hide
Query:  RPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI
        RPRGNR SLQT +L KTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+
Subjt:  RPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI

A0A5A7UAH6 CCHC-type domain-containing protein7.6e-1276.47Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI
        PRGNR +L T +L KTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI

A0A5A7V2F2 Uncharacterized protein1.7e-1174.51Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI
        PRGNR SLQ  +L KTVEIELP+PDTLPTS+ESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI

A0A5A7VIY9 Uncharacterized protein5.3e-1345.53Show/hide
Query:  VYKLNQKLYLEKDKGQPRICVVFVRGISGQIGLESHFHFFR--------------PRGNRSSLQTRELAKT-----------------VEIELPVPDTLP
        V+K NQKLYL +   +PRI      G      L   F F +              PRGNRSSLQT EL KT                 VEIELPVPDTLP
Subjt:  VYKLNQKLYLEKDKGQPRICVVFVRGISGQIGLESHFHFFR--------------PRGNRSSLQTRELAKT-----------------VEIELPVPDTLP

Query:  TSAESSITSSSTWVELYIESVHI
        TSAES  ++SSTW+ELY E VH+
Subjt:  TSAESSITSSSTWVELYIESVHI

A0A5D3BET3 Uncharacterized protein5.8e-1278.43Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI
        PRGNR S QT +L KTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSITSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCGTTGGAAGCAGCCTTTGTTTGATAAATCCCATCCAAAGCACAGGATTTTCGAGCAAACTAGGAGGATCTCTGGTGTTCTCTGGTGTTCTGAGCATTATGGGGT
GTACAAGTTGAATCAGAAGCTCTATTTGGAGAAAGATAAAGGGCAGCCTCGAATCTGTGTTGTTTTCGTTCGGGGCATATCTGGACAAATCGGTTTGGAATCTCATTTTC
ATTTTTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGT
TCTATAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTCGTTGGAAGCAGCCTTTGTTTGATAAATCCCATCCAAAGCACAGGATTTTCGAGCAAACTAGGAGGATCTCTGGTGTTCTCTGGTGTTCTGAGCATTATGGGGT
GTACAAGTTGAATCAGAAGCTCTATTTGGAGAAAGATAAAGGGCAGCCTCGAATCTGTGTTGTTTTCGTTCGGGGCATATCTGGACAAATCGGTTTGGAATCTCATTTTC
ATTTTTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGT
TCTATAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAG
Protein sequenceShow/hide protein sequence
MSRWKQPLFDKSHPKHRIFEQTRRISGVLWCSEHYGVYKLNQKLYLEKDKGQPRICVVFVRGISGQIGLESHFHFFRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAES
SITSSSTWVELYIESVHIVNVL