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Spg025033 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025033
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGRF-type domain-containing protein
Genome locationscaffold12:9729199..9730174
RNA-Seq ExpressionSpg025033
SyntenySpg025033
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1823597.1 unnamed protein product [Ananas comosus var. bracteatus]1.4e-1260Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
KAG6473655.1 hypothetical protein ZIOFF_067572 [Zingiber officinale]6.8e-1255.56Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
        C+CGLRA L  SWT+ NPGRRF+ CP YK    GCGFF W DPE SE SK +I        KL+ E+ +LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
KAG6514370.1 hypothetical protein ZIOFF_024723 [Zingiber officinale]3.1e-1252.63Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
        CHCGLRA L TSWT+ NPGR F+ CP Y+ +     +GCGFF W DPE+SE SK +I        KL+ E+ +LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
KAG6514840.1 hypothetical protein ZIOFF_025214 [Zingiber officinale]4.7e-1356.94Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
        CHCGLRA L TSWT+ NPGRRF+ CP Y+    GCGFF W DPE+SE SK +I        KL+ E+ +LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
KAG6527582.1 hypothetical protein ZIOFF_009697 [Zingiber officinale]8.9e-1255.56Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
        C+CGLRA L TSWT+ NP RRF+ CP Y+    GCGFF W DPEVSE SK +I        KL+ E+ +LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
TrEMBL top hitse value%identityAlignment
A0A0B2QQH9 GRF-type domain-containing protein (Fragment)1.3e-1147.95Show/hide
Query:  SEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNG-SGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLK
        SE ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G   C FF W DP  +   K++I+ L  EV +LK
Subjt:  SEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNG-SGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLK
A0A445HAE1 GRF-type domain-containing protein7.3e-1236.84Show/hide
Query:  EESIRGDNSEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL--------EW
        E S     S+ ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP  +   K++I+ L  EV +LK   ++L+ +        + 
Subjt:  EESIRGDNSEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL--------EW

Query:  LYRVIIIVLVGNLV
        L+ V+++  + NL+
Subjt:  LYRVIIIVLVGNLV
A0A445ILI1 GRF-type domain-containing protein9.6e-1242.22Show/hide
Query:  EESIRGDNSEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL
        E S      E ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP  +   K++I+ L  EV +LK   ++L+ +
Subjt:  EESIRGDNSEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL
A0A6V7NYI1 GRF-type domain-containing protein6.6e-1360Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
A0A6V7P503 GRF-type domain-containing protein5.6e-1256.34Show/hide
Query:  IKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
        + NP  C CGL+A   TS T  N GRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  IKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein3.9e-0542.86Show/hide
Query:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
        +P   HC   A     +TS T++NP RRFY CP        CG+F WCD
Subjt:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
AT3G42860.1 zinc knuckle (CCHC-type) family protein2.9e-0860.47Show/hide
Query:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
        C CG+   LI TS T +NPGR+FY CP  + NG GCGFF WCD
Subjt:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
AT5G33393.1 unknown protein1.5e-0436.36Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVS-EHSKEVIIKLRDEVGQLKK
        C+CG     I SWT  N GRRF+ C  +       GF  W D E      K  +++ RDE+  LK+
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVS-EHSKEVIIKLRDEVGQLKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGATATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAATTAAGAACCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGT
GTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTAT
CGTGTAATAATTATAGTATTGGTGGGCAATTTAGTGATTGTATTTGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGATATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAATTAAGAACCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGT
GTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTAT
CGTGTAATAATTATAGTATTGGTGGGCAATTTAGTGATTGTATTTGGGTTTTGA
Protein sequenceShow/hide protein sequence
MSRDMPQKLSKIAMDNFEESIRGDNSEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRLEWLY
RVIIIVLVGNLVIVFGF