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Spg025100 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025100
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA repair protein RadA
Genome locationscaffold12:8557164..8557722
RNA-Seq ExpressionSpg025100
SyntenySpg025100
Gene Ontology termsGO:0000725 - recombinational repair (biological process)
GO:0006627 - protein processing involved in protein targeting to mitochondrion (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0005759 - mitochondrial matrix (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR014721 - Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 - Ribosomal protein S5 domain 2-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581870.1 hypothetical protein SDJN03_21872, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3690Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSF
        SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD A S+  F
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSF
XP_022153628.1 uncharacterized protein LOC111021088 [Momordica charantia]3.2e-3790Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSF
        SFLEFPIPNDIAFIGEIGLGGELR VSRMEKRINTV KLGFKRCVVPKSAENCLGVVELG+MKLIGCRNLKDV+N+VFMARDEA    SF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSF
XP_022956185.1 uncharacterized protein LOC111457955 [Cucurbita moschata]3.2e-3792.13Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQS
        SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD A S+QS
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQS
XP_022980476.1 uncharacterized protein LOC111479856 [Cucurbita maxima]6.5e-3890.22Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSFDG
        SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTV+KLGFKRCVVPKSAE CLGVVELGE +LIGCRNLKDVIN VFMARD A S+QSF G
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSFDG
XP_023527681.1 uncharacterized protein LOC111790828 [Cucurbita pepo subsp. pepo]1.5e-3790.22Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSFDG
        SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAE CLGVVELGE +LIGC NLKDVIN VFMARD A S+QSF G
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSFDG
TrEMBL top hitse value%identityAlignment
A0A1S3BHQ7 DNA repair protein RadA isoform X21.2e-3485.87Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEAS--SLQSF
        SFLEF IPNDIAFIGEIGLGGELRMV RMEKRINTVAKLGFKRCVVPKSAENCLGVV LG+MKLIGC NLKDVIN+VFM RDE +  S+ SF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEAS--SLQSF
A0A5D3C9C8 DNA repair protein RadA isoform X11.2e-3485.87Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEAS--SLQSF
        SFLEF IPNDIAFIGEIGLGGELRMV RMEKRINTVAKLGFKRCVVPKSAENCLGVV LG+MKLIGC NLKDVIN+VFM RDE +  S+ SF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEAS--SLQSF
A0A6J1DHZ5 uncharacterized protein LOC1110210881.6e-3790Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSF
        SFLEFPIPNDIAFIGEIGLGGELR VSRMEKRINTV KLGFKRCVVPKSAENCLGVVELG+MKLIGCRNLKDV+N+VFMARDEA    SF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSF
A0A6J1GX44 uncharacterized protein LOC1114579551.6e-3792.13Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQS
        SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD A S+QS
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQS
A0A6J1ITP4 uncharacterized protein LOC1114798563.2e-3890.22Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSFDG
        SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTV+KLGFKRCVVPKSAE CLGVVELGE +LIGCRNLKDVIN VFMARD A S+QSF G
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSLQSFDG
SwissProt top hitse value%identityAlignment
P0DD78 DNA repair protein RadA2.5e-0839.74Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
        S+ E P     AF+GEIGL GE+R V+R+E+RIN  AKLGF +   PK+A   + + +   ++++G   +  V+ +VF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
Q5XDZ7 DNA repair protein RadA2.5e-0839.74Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
        S+ E P     AF+GEIGL GE+R V+R+E+RIN  AKLGF +   PK+A   + + +   ++++G   +  V+ +VF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
Q8DRP0 DNA repair protein RadA6.6e-0939.74Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
        S+ + P      F+GE+GL GE+R V+R+E+RIN  AKLGF +  VPK+  +  G+    E+++IG   +++V+  VF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
Q8P2Q5 DNA repair protein RadA2.5e-0839.74Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
        S+ E P     AF+GEIGL GE+R V+R+E+RIN  AKLGF +   PK+A   + + +   ++++G   +  V+ +VF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
Q9A1K1 DNA repair protein RadA5.1e-0941.03Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
        S+ E P     AF+GEIGL GE+R V+R+E+RIN  AKLGF +   PK+A   + + +   ++++G   +  V+N+VF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
Arabidopsis top hitse value%identityAlignment
AT5G50340.1 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases2.1e-2667.95Show/hide
Query:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF
        SFLEFPIP+ +AFIGEIGLGGE+R V RMEKR++TVAKLGF +CVVPKS E  L  + L E+++IGC+NLK++IN+VF
Subjt:  SFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATATCCTCTTACCTCTCTAATTCATCTGCTTCTTTCTATAAATAATCTTTGGATTTGTCACTTCAGCTTTTTGGAGTTCCCCATTCCAAATGACATTGCATTCAT
TGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTGAGTAGAATGGAGAAGAGGATCAATACTGTAGCCAAACTAGGTTTCAAGAGATGTGTAGTACCCAAATCAGCTG
AAAACTGTTTGGGAGTGGTAGAGTTAGGGGAGATGAAGCTCATAGGTTGCAGAAATTTGAAAGATGTTATCAATAGTGTGTTTATGGCGAGAGATGAAGCTAGCAGTCTA
CAATCTTTTGATGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAATATCCTCTTACCTCTCTAATTCATCTGCTTCTTTCTATAAATAATCTTTGGATTTGTCACTTCAGCTTTTTGGAGTTCCCCATTCCAAATGACATTGCATTCAT
TGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTGAGTAGAATGGAGAAGAGGATCAATACTGTAGCCAAACTAGGTTTCAAGAGATGTGTAGTACCCAAATCAGCTG
AAAACTGTTTGGGAGTGGTAGAGTTAGGGGAGATGAAGCTCATAGGTTGCAGAAATTTGAAAGATGTTATCAATAGTGTGTTTATGGCGAGAGATGAAGCTAGCAGTCTA
CAATCTTTTGATGGGTAG
Protein sequenceShow/hide protein sequence
MQYPLTSLIHLLLSINNLWICHFSFLEFPIPNDIAFIGEIGLGGELRMVSRMEKRINTVAKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINSVFMARDEASSL
QSFDG