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Spg025143 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025143
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscription factor PRE6-like
Genome locationscaffold13:41920852..41921856
RNA-Seq ExpressionSpg025143
SyntenySpg025143
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]5.4e-3084.38Show/hide
Query:  MSSRRSSRSRNSSSAAQ-ISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRNS++A+  ISDDQI DLVSKLQRLIPE+RN  ASHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+A IIR+LFM
Subjt:  MSSRRSSRSRNSSSAAQ-ISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]1.4e-3086.46Show/hide
Query:  MSSRRSSRSRNSS-SAAQISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRNSS S+  ISDDQI DLVSKLQRLIPE+RN  ASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+AAIIR+LF+
Subjt:  MSSRRSSRSRNSS-SAAQISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]2.7e-3492.55Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRN SS AQISDDQI+DLVSKLQRLIPEIRNT SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+AAIIR+LFM
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]6.1e-3491.49Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRN +S AQISDDQI+DLVSKLQRLIPEIRNT SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+AAIIR+LFM
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]1.5e-3288.42Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRNSS A  ISDDQI+DLVSKLQRLIPE+RN  ASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA+TEND+A+AAIIR+LFM
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein2.6e-3084.38Show/hide
Query:  MSSRRSSRSRNSSSAAQ-ISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRNS++A+  ISDDQI DLVSKLQRLIPE+RN  ASHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+A IIR+LFM
Subjt:  MSSRRSSRSRNSSSAAQ-ISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

A0A1S3CPL2 transcription factor PRE6-like6.8e-3186.46Show/hide
Query:  MSSRRSSRSRNSS-SAAQISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRNSS S+  ISDDQI DLVSKLQRLIPE+RN  ASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+AAIIR+LF+
Subjt:  MSSRRSSRSRNSS-SAAQISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

A0A5D3BPI2 Transcription factor PRE6-like6.8e-3186.46Show/hide
Query:  MSSRRSSRSRNSS-SAAQISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRNSS S+  ISDDQI DLVSKLQRLIPE+RN  ASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+AAIIR+LF+
Subjt:  MSSRRSSRSRNSS-SAAQISDDQINDLVSKLQRLIPEIRN-TASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

A0A6J1G4C0 transcription factor PRE6-like1.3e-3492.55Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRN SS AQISDDQI+DLVSKLQRLIPEIRNT SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+AAIIR+LFM
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

A0A6J1KGK3 transcription factor PRE6-like1.3e-3492.55Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRRSSRSRN SS AQISDDQI+DLVSKLQRLIPEIRNT SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATEND+A+AAIIR+LFM
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI74.3e-2265.96Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSR  SRSR +SSAA+I+D+QI DLVSKLQ L+PE R  ++ +V +++VLQETC+YIR+LHREVDDLSERL++LLAA +  TAQAA+IR L M
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

B8APB5 Transcription factor ILI63.3e-2265.96Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRR SRSR S S ++I+D+QI+DLVSKLQ L+PE R  ++ +V +S+VLQETCNYIR+LH+EVDDLSERLS+LLA ++  +AQAAIIR+L M
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

Q0DUR2 Transcription factor ILI63.3e-2265.96Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MSSRR SRSR S S ++I+D+QI+DLVSKLQ L+PE R  ++ +V +S+VLQETCNYIR+LH+EVDDLSERLS+LLA ++  +AQAAIIR+L M
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

Q8GW32 Transcription factor PRE61.8e-2877.17Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL
        MSSRRSSRSR S S ++ISDDQI+DLVSKLQ LIPE+R   S KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLA+T++++A+AAIIR+L
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL

Q9CA64 Transcription factor PRE36.0e-2469.89Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNT-ASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL
        MS RR SRSR SS  ++IS+DQINDL+ KLQ+L+PE+R++  S KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA   +DTAQAA+IR+L
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNT-ASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.3e-2977.17Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL
        MSSRRSSRSR S S ++ISDDQI+DLVSKLQ LIPE+R   S KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLA+T++++A+AAIIR+L
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.2e-2569.89Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNT-ASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL
        MS RR SRSR SS  ++IS+DQINDL+ KLQ+L+PE+R++  S KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA   +DTAQAA+IR+L
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNT-ASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-2263.16Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEI-RNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MS+R   RSR +S+A++ISDDQ+ DLVSKL++ +PEI     S KVSASKVLQETCNYIR LHREVD+LS+RLSQLL + + D+ +AA+IR+L M
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEI-RNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM

AT5G15160.1 BANQUO 21.2e-2264.52Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIR-NTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL
        MSS R  RSR +SS+++ISDDQI DL+SKL++ IPEIR N  S+ VSASKVLQETCNYIRNL++E DDLS+RL+QLL + + ++ QAA+IR+L
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIR-NTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein8.8e-2364.21Show/hide
Query:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEI-RNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM
        MS+R   RSR SSSA +ISD+Q+ DLVSKL++++PEI +   S K SASKVLQETCNYIRNL+REVD+LSERLSQLL + + D+ +AA+IR+L M
Subjt:  MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEI-RNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGCAGAAGATCTTCCCGTTCCAGAAACTCGTCATCAGCTGCCCAAATCTCTGACGATCAGATCAATGACCTCGTTTCCAAGTTGCAGCGCCTCATCCCTGAGAT
TCGCAACACCGCTTCCCACAAGGTGTCGGCTTCCAAAGTGTTGCAAGAAACATGCAATTACATAAGGAACTTACACAGGGAAGTGGATGATTTGAGTGAGAGATTGTCGC
AACTTTTGGCCGCAACAGAAAACGACACTGCCCAGGCTGCCATTATTAGGACTTTATTCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAGCAGAAGATCTTCCCGTTCCAGAAACTCGTCATCAGCTGCCCAAATCTCTGACGATCAGATCAATGACCTCGTTTCCAAGTTGCAGCGCCTCATCCCTGAGAT
TCGCAACACCGCTTCCCACAAGGTGTCGGCTTCCAAAGTGTTGCAAGAAACATGCAATTACATAAGGAACTTACACAGGGAAGTGGATGATTTGAGTGAGAGATTGTCGC
AACTTTTGGCCGCAACAGAAAACGACACTGCCCAGGCTGCCATTATTAGGACTTTATTCATGTAA
Protein sequenceShow/hide protein sequence
MSSRRSSRSRNSSSAAQISDDQINDLVSKLQRLIPEIRNTASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDTAQAAIIRTLFM