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Spg025267 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025267
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:39917037..39923841
RNA-Seq ExpressionSpg025267
SyntenySpg025267
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO54874.1 reverse transcriptase [Corchorus capsularis]6.4e-1232.12Show/hide
Query:  IESSIFLEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPST
        +E +  L  +E+V  T W  WS+RNK +HE   S   T    + + ++    A  R  + R         Q  P+ W PP    +K+N D A    S   
Subjt:  IESSIFLEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPST

Query:  GLGTICRNKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNK
        GLG + R+ DG ++F ++   +   + L AE  AI  GL +A S G L   VESD L A+   N+
Subjt:  GLGTICRNKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNK

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.6e-1737.01Show/hide
Query:  ELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIP---TRWTPPSEDYWKLNVDVACVHPSPSTGLGTICR
        +L A T W  W DRN   H  ++S    +  WI  Y  +Y       +Q +++ RI      +P    RW PP +   K+N D AC   S STGLG I R
Subjt:  ELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIP---TRWTPPSEDYWKLNVDVACVHPSPSTGLGTICR

Query:  NKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALK
        +  G L+ A S      ++PL AE R I E LK+A S    +L VESDC  A++
Subjt:  NKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALK

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]2.9e-1231.21Show/hide
Query:  MQIESSIFLEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMAN-SRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPS
        + +  S+   D +LV V  W  W+DRN +  +  I  A  +S WI  Y+  +++ +       R         + I   W+PP   + K+NVD AC    
Subjt:  MQIESSIFLEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMAN-SRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPS

Query:  PSTGLGTICRNKDGALMFASSHHFDFSMDPLGAETRAIYEG
          TG+G +CRN+ G ++ A+SH      DPL AE+ A+++G
Subjt:  PSTGLGTICRNKDGALMFASSHHFDFSMDPLGAETRAIYEG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.3e-1637.01Show/hide
Query:  EDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICR
        +DL L A+T W  W+DRN L+H + +SP   K +W+  ++ S+  A       R  +  R   Q     W P S    KLN D AC     ST  G I R
Subjt:  EDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICR

Query:  NKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALK
        +   +L+ A+S    F + PL AE R I EGLK A +     L VESD L+A++
Subjt:  NKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALK

XP_040996092.1 LOW QUALITY PROTEIN: uncharacterized protein LOC121242268 [Juglans microcarpa x Juglans regia]4.9e-1231.36Show/hide
Query:  WSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICRNKDGALMFASSHH
        W  RNK+VH+    P         Q +  +  +   R       R    ++ +  RW+PPS+D  KLN+D A       T LG I RN  G ++ A S  
Subjt:  WSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICRNKDGALMFASSHH

Query:  FDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNKAADVVAKAARSSGGLHEIE---YC
            ++    E  A+  GL++ L++G  KL +ESDCL  ++  NK    VA++  S G +HE+    YC
Subjt:  FDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNKAADVVAKAARSSGGLHEIE---YC

TrEMBL top hitse value%identityAlignment
A0A1R3G9W2 Reverse transcriptase3.1e-1232.12Show/hide
Query:  IESSIFLEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPST
        +E +  L  +E+V  T W  WS+RNK +HE   S   T    + + ++    A  R  + R         Q  P+ W PP    +K+N D A    S   
Subjt:  IESSIFLEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPST

Query:  GLGTICRNKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNK
        GLG + R+ DG ++F ++   +   + L AE  AI  GL +A S G L   VESD L A+   N+
Subjt:  GLGTICRNKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNK

A0A5B6VU56 Reverse transcriptase2.0e-1130.19Show/hide
Query:  ELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQG-IPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICRNK
        E+ A++YW  W + NK+ HE A         +IK Y A          +I +   +   T G    RW PP  +  KLN D +       +  G I RN 
Subjt:  ELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQG-IPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICRNK

Query:  DGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNKAAD
        +G +M A ++ +D++ DP+ AE RA  + + +A  +G  ++ VE D L  +K  N   D
Subjt:  DGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNKAAD

A0A6J1BQ49 uncharacterized protein LOC1110047863.2e-1737.01Show/hide
Query:  ELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIP---TRWTPPSEDYWKLNVDVACVHPSPSTGLGTICR
        +L A T W  W DRN   H  ++S    +  WI  Y  +Y       +Q +++ RI      +P    RW PP +   K+N D AC   S STGLG I R
Subjt:  ELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIP---TRWTPPSEDYWKLNVDVACVHPSPSTGLGTICR

Query:  NKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALK
        +  G L+ A S      ++PL AE R I E LK+A S    +L VESDC  A++
Subjt:  NKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALK

A0A6J1DX30 uncharacterized protein LOC1110248743.5e-1637.01Show/hide
Query:  EDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICR
        +DL L A+T W  W+DRN L+H + +SP   K +W+  ++ S+  A       R  +  R   Q     W P S    KLN D AC     ST  G I R
Subjt:  EDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICR

Query:  NKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALK
        +   +L+ A+S    F + PL AE R I EGLK A +     L VESD L+A++
Subjt:  NKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALK

B8BN96 Reverse transcriptase domain-containing protein2.6e-1130.25Show/hide
Query:  LEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYI-ASYKMANS-RRNQIRDSNRIRD-PTQGIPTR---------WTPPSEDYWKLNVDVACV
        L  + +  +T W NW  RN+L+H ++  P  T  ++I+ Y+   +++  + + + ++  + +R  P +G P           W  P + + KLNVD +  
Subjt:  LEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYI-ASYKMANS-RRNQIRDSNRIRD-PTQGIPTR---------WTPPSEDYWKLNVDVACV

Query:  HPSPSTGLGTICRNKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDC
          S   GLG I RN  G ++F S    +   +PL +E RA  EGLK+A+    L ++VE+DC
Subjt:  HPSPSTGLGTICRNKDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0625.36Show/hide
Query:  WTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICRNKDGALMFAS
        W  W   N LV     +   T  +        + + N+  N+ ++ NR  DP++   T+W+PP  D  K N D +    +  +GLG I RN  G ++   
Subjt:  WTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICRNKDGALMFAS

Query:  SHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESD
           F   M    AE   +   ++ +   G  K+  E D
Subjt:  SHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATAGAATCATCGATTTTCCTTGAGGATCTCGAGCTGGTTGCGGTCACCTATTGGACGAATTGGAGTGACAGAAACAAACTGGTCCACGAAGAAGCGATCTCTCC
TGCTCCAACCAAAAGCAAATGGATTAAACAGTACATTGCCTCCTACAAGATGGCTAATTCTAGAAGAAATCAAATCCGAGACTCTAATCGAATTCGAGACCCTACCCAAG
GAATCCCTACTCGTTGGACGCCTCCGTCGGAAGATTATTGGAAACTTAATGTTGATGTTGCATGCGTTCATCCTTCTCCTTCAACAGGGCTGGGAACAATTTGTAGAAAT
AAAGACGGTGCCCTGATGTTTGCTTCCTCCCACCATTTCGATTTTTCTATGGATCCTCTCGGAGCAGAGACCAGAGCGATTTACGAGGGATTGAAGATTGCTCTGTCTTT
GGGAAAGCTAAAGCTGCGGGTTGAATCCGATTGTTTAATGGCATTAAAGAACTGTAATAAAGCAGCAGACGTGGTGGCTAAAGCTGCTAGATCATCAGGGGGTTTGCATG
AAATTGAATATTGTGAGGGAGCAAGGCCCAAACCCAGGTTCTGTCCTGAAGGGAATTTTATGGACAAGACAGAACCTGAACCCAAATACTTTCTTGGACTCAAAGTCATC
ATTCTTCGTCGTCTAGGGTTAATGTTTTCGAGTGAGTTGAGTTCTGAAGCTGTTTCTGTCTCCCAATGCGATCTTCGAATCTTCAAAGCCGAGGGAAAAGAAAGAAGTAA
ACTCCTCATTCGTACCGCTCAGACTCAATTCCCGATCCAGCGCCGTAAACTTAACTGCGAGATGTCGGAGGCAAGTTCCAGAGAGAACCAATTCGCAATGACACACTCGT
ATAGAATGCCTGTTCTCCCACATTTTCAGCAGCTTCTTATTCCCTCTGTTTCCCTTAATCACAGTGCTGTAGAAGTGTATTTGGATGATATTCTGGGGTTTCCTGGGTCA
GATATTGATTTTCTTGTTCTTATGGATAATGGTACCTGCTGTTATTCCGAGCATCAATATGGAGTGAGTGTTTCTCAGCCGCTGTATGACATCCCAGCTGACCAATCAGC
TTCCGTTTCTGAATGGACTGGTTGCATGATGCCGACACCTAGGAAACAGCATTTACCTTCTAACACGTGGATTGTGATGAAAGTGGACGCAATTAAAATAAGAGAACTGT
TTGATGTTAATCTTATGAGACACGCGTCTTTTGCCGGTGGCTTCCCACGTGTGAGGCTTAAGCTGCGAGCAAATGCTTTACTTATGGACGAGGACTCAATAGGTATCAAA
TCCACCTTATGGATCAAGTTTCCTGGTAATTTTGATGGCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGATAGAATCATCGATTTTCCTTGAGGATCTCGAGCTGGTTGCGGTCACCTATTGGACGAATTGGAGTGACAGAAACAAACTGGTCCACGAAGAAGCGATCTCTCC
TGCTCCAACCAAAAGCAAATGGATTAAACAGTACATTGCCTCCTACAAGATGGCTAATTCTAGAAGAAATCAAATCCGAGACTCTAATCGAATTCGAGACCCTACCCAAG
GAATCCCTACTCGTTGGACGCCTCCGTCGGAAGATTATTGGAAACTTAATGTTGATGTTGCATGCGTTCATCCTTCTCCTTCAACAGGGCTGGGAACAATTTGTAGAAAT
AAAGACGGTGCCCTGATGTTTGCTTCCTCCCACCATTTCGATTTTTCTATGGATCCTCTCGGAGCAGAGACCAGAGCGATTTACGAGGGATTGAAGATTGCTCTGTCTTT
GGGAAAGCTAAAGCTGCGGGTTGAATCCGATTGTTTAATGGCATTAAAGAACTGTAATAAAGCAGCAGACGTGGTGGCTAAAGCTGCTAGATCATCAGGGGGTTTGCATG
AAATTGAATATTGTGAGGGAGCAAGGCCCAAACCCAGGTTCTGTCCTGAAGGGAATTTTATGGACAAGACAGAACCTGAACCCAAATACTTTCTTGGACTCAAAGTCATC
ATTCTTCGTCGTCTAGGGTTAATGTTTTCGAGTGAGTTGAGTTCTGAAGCTGTTTCTGTCTCCCAATGCGATCTTCGAATCTTCAAAGCCGAGGGAAAAGAAAGAAGTAA
ACTCCTCATTCGTACCGCTCAGACTCAATTCCCGATCCAGCGCCGTAAACTTAACTGCGAGATGTCGGAGGCAAGTTCCAGAGAGAACCAATTCGCAATGACACACTCGT
ATAGAATGCCTGTTCTCCCACATTTTCAGCAGCTTCTTATTCCCTCTGTTTCCCTTAATCACAGTGCTGTAGAAGTGTATTTGGATGATATTCTGGGGTTTCCTGGGTCA
GATATTGATTTTCTTGTTCTTATGGATAATGGTACCTGCTGTTATTCCGAGCATCAATATGGAGTGAGTGTTTCTCAGCCGCTGTATGACATCCCAGCTGACCAATCAGC
TTCCGTTTCTGAATGGACTGGTTGCATGATGCCGACACCTAGGAAACAGCATTTACCTTCTAACACGTGGATTGTGATGAAAGTGGACGCAATTAAAATAAGAGAACTGT
TTGATGTTAATCTTATGAGACACGCGTCTTTTGCCGGTGGCTTCCCACGTGTGAGGCTTAAGCTGCGAGCAAATGCTTTACTTATGGACGAGGACTCAATAGGTATCAAA
TCCACCTTATGGATCAAGTTTCCTGGTAATTTTGATGGCAACTGA
Protein sequenceShow/hide protein sequence
MQIESSIFLEDLELVAVTYWTNWSDRNKLVHEEAISPAPTKSKWIKQYIASYKMANSRRNQIRDSNRIRDPTQGIPTRWTPPSEDYWKLNVDVACVHPSPSTGLGTICRN
KDGALMFASSHHFDFSMDPLGAETRAIYEGLKIALSLGKLKLRVESDCLMALKNCNKAADVVAKAARSSGGLHEIEYCEGARPKPRFCPEGNFMDKTEPEPKYFLGLKVI
ILRRLGLMFSSELSSEAVSVSQCDLRIFKAEGKERSKLLIRTAQTQFPIQRRKLNCEMSEASSRENQFAMTHSYRMPVLPHFQQLLIPSVSLNHSAVEVYLDDILGFPGS
DIDFLVLMDNGTCCYSEHQYGVSVSQPLYDIPADQSASVSEWTGCMMPTPRKQHLPSNTWIVMKVDAIKIRELFDVNLMRHASFAGGFPRVRLKLRANALLMDEDSIGIK
STLWIKFPGNFDGN