; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025275 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025275
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA-binding protein 24-A
Genome locationscaffold13:41671671..41678017
RNA-Seq ExpressionSpg025275
SyntenySpg025275
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599081.1 putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia]1.3e-13587.14Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP
        RANCNLASLGRPRPPISYGRLRPP V+VGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYVYP
Subjt:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP

Query:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QGGYNPFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQF GPNVN LTSSPMPTIQAPYPS
Subjt:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

KAG7030017.1 putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-15184.92Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP
        RANCNLASLGRPRPPISYGRLRPP V+VGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYVYP
Subjt:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP

Query:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSVALKTCLFHQGFQHLLQHNH
        QGGYNPFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQF GPNVN LTSSPMPTIQAPYPS         +G QHLLQHNH
Subjt:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSVALKTCLFHQGFQHLLQHNH

Query:  SSLFILLLSLYKVAVLTKHLGEELI
        SSL ILLLSLYKVAVLT+HLGEELI
Subjt:  SSLFILLLSLYKVAVLTKHLGEELI

XP_004146763.1 RNA-binding protein 24-A [Cucumis sativus]2.9e-13587.23Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV
        RANCNLASLGRPRPP+SY  GRLR P V+VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYV
Subjt:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV

Query:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

XP_008464801.1 PREDICTED: RNA-binding protein 24-A [Cucumis melo]5.0e-13587.23Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV
        RANCNLASLGRPRPPIS+  GRLR P V+VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYV
Subjt:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV

Query:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

XP_022946505.1 RNA-binding protein 24-A [Cucurbita moschata]1.3e-13587.14Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP
        RANCNLASLGRPRPPISYGRLRPP V+VGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYVYP
Subjt:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP

Query:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QGGYNPFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQF GPNVN LTSSPMPTIQAPYPS
Subjt:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

TrEMBL top hitse value%identityAlignment
A0A0A0KHA9 RRM domain-containing protein1.4e-13587.23Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV
        RANCNLASLGRPRPP+SY  GRLR P V+VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYV
Subjt:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV

Query:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

A0A1S3CME8 RNA-binding protein 24-A2.4e-13587.23Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV
        RANCNLASLGRPRPPIS+  GRLR P V+VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYV
Subjt:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV

Query:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

A0A5D3CHF9 RNA-binding protein 24-A2.4e-13587.23Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV
        RANCNLASLGRPRPPIS+  GRLR P V+VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYV
Subjt:  RANCNLASLGRPRPPISY--GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYV

Query:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QFSGPNVNALTSSPMPTIQAPYPS
Subjt:  YPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

A0A6J1G3W1 RNA-binding protein 24-A6.4e-13687.14Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP
        RANCNLASLGRPRPPISYGRLRPP V+VGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYVYP
Subjt:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP

Query:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QGGYNPFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQF GPNVN LTSSPMPTIQAPYPS
Subjt:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

A0A6J1KGG8 RNA-binding protein 24-A3.5e-13485.71Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN+GRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP
        RANCNLASLGRPRPPISYGRLRPP V+VGGMQPNRG Y GNFGYQQPVSYAYQQGLAYPPYG                           YATYGPEYVYP
Subjt:  RANCNLASLGRPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYP

Query:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        QGGYNPFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QF GPNVN LTSSPMPTIQAPYPS
Subjt:  QGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

SwissProt top hitse value%identityAlignment
Q5ZMA3 RNA-binding protein 244.7e-2738.81Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPTVF
        DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+  P   
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPTVF

Query:  VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQI----SLFCEYRRSYATYGPEYVY-----------PQGGYNPFVGQQY
         G  Q +       FG   P  Y Y Q    P    +P V  +A+  +    I    + + +Y  + A Y  +Y Y             GGY   V Q  
Subjt:  VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQI----SLFCEYRRSYATYGPEYVY-----------PQGGYNPFVGQQY

Query:  LQIYGVPGSASPTIYHYGQ
              PG+A+     +GQ
Subjt:  LQIYGVPGSASPTIYHYGQ

Q6GQD3 RNA-binding protein 24-A3.6e-2739.35Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPTVF
        DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+  P   
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPTVF

Query:  VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEV-PFSASKPAKHIQISLFCEYRRSYATYGPEY-VYPQGGYNPFVGQQYLQIYG--------
         G  Q +       FG   P  Y Y Q    P    +P V P +A+  + +I  +     + S A     Y  YP        G      YG        
Subjt:  VGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEV-PFSASKPAKHIQISLFCEYRRSYATYGPEY-VYPQGGYNPFVGQQYLQIYG--------

Query:  --VPGSASPTIYHYGQ
           PGSA+     +GQ
Subjt:  --VPGSASPTIYHYGQ

Q76LC6 RNA-binding protein 241.4e-2638.16Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLG-RPRPPISYGRLRPPTV
        DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG +PR             
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLG-RPRPPISYGRLRPPTV

Query:  FVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTI
            MQP        FG  Q      Q+    P +   P+     S    HIQ +       + AT    Y+        + G  Y Q      +A+   
Subjt:  FVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTI

Query:  Y-HYGQLGQTVPGGHGYGAVHGYAMPSP
        Y  Y         G+   A +GYAM  P
Subjt:  Y-HYGQLGQTVPGGHGYGAVHGYAMPSP

Q9I8B3 RNA-binding protein 24-B1.2e-2742.05Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPTVF
        DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+  P   
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPTVF

Query:  VGGMQPNRGTYIGNFG----YQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVY
         G  Q +       +G    Y  P +Y  QQGL  P   +V +   +++ P      + + +Y  + A    +Y Y
Subjt:  VGGMQPNRGTYIGNFG----YQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVY

Q9M1S3 Probable RNA-binding protein ARP17.8e-3038.89Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPI
        ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYGFVTF+D ++A RAC D TPII+GRRANCNLASLG      
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPI

Query:  SYGRLR-PPTVFVGGMQPNRGT-----YIGNFG-YQQPVSYAYQQ-----GLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSY--ATYGPEY---VY
          GRLR  PT+      P  G      ++GN   +  P  +  QQ       A P YGY          P+ ++  ++    +  Y   TY   Y   + 
Subjt:  SYGRLR-PPTVFVGGMQPNRGT-----YIGNFG-YQQPVSYAYQQ-----GLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSY--ATYGPEY---VY

Query:  PQGGYNPFVGQQYLQIYG----VPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPS-PQIVQFSGPNVN
        PQ    P     +  +YG    + G+ASP +  Y     TV   H   A+ G+  PS  + + FS P ++
Subjt:  PQGGYNPFVGQQYLQIYG----VPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPS-PQIVQFSGPNVN

Arabidopsis top hitse value%identityAlignment
AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-8257.09Show/hide
Query:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRP
        S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR 
Subjt:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRP

Query:  RPPISY-------GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVY--PQGG
        RPP+ Y       GR+RPP+ +VG +Q  RG + G+  Y QP +Y YQQG+ Y PYG  P                           YGP+Y+Y   QG 
Subjt:  RPPISY-------GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVY--PQGG

Query:  YNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSVALKT
        Y P++GQQYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q          +SPM  IQ+PYPS +  T
Subjt:  YNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSVALKT

AT1G20880.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-8257.09Show/hide
Query:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRP
        S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR 
Subjt:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRP

Query:  RPPISY-------GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVY--PQGG
        RPP+ Y       GR+RPP+ +VG +Q  RG + G+  Y QP +Y YQQG+ Y PYG  P                           YGP+Y+Y   QG 
Subjt:  RPPISY-------GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVY--PQGG

Query:  YNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSVALKT
        Y P++GQQYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q          +SPM  IQ+PYPS +  T
Subjt:  YNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSVALKT

AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-4543.9Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP--
        S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYGFVTFRD +SA RA ADP P+IDGR+ANCN+AS GRPRP  
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP--

Query:  PISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYPQGGYNPFVGQ-QYL
        P   G+   P+ + GG Q +        G   PV  A    L YP YGY                            TY  EY Y Q  YN  + Q QY 
Subjt:  PISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYPQGGYNPFVGQ-QYL

Query:  --QIYGVPGSASPTI-------YHYGQLGQTVPGGH---GYGAVH--------GYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
          Q+YG  G+ SP+        Y+Y Q     P  H    Y   H           +PS         NV A T S +PT Q P  S
Subjt:  --QIYGVPGSASPTI-------YHYGQLGQTVPGGH---GYGAVH--------GYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-9259.52Show/hide
Query:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQ + G        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILEAVVI DKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGR
Subjt:  MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY-------GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATY
        RANCNLASLGRPRPP+ Y       GRLRP + ++G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG                              Y
Subjt:  RANCNLASLGRPRPPISY-------GRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATY

Query:  GPEYVY--PQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS
        GPEY+Y   QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY++P   I+Q  GP V+ +T+S MP +QAPYPS
Subjt:  GPEYVY--PQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPS

AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.4e-4444.09Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPR--P
        S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYGFVTFR+ +SA RA ADP P+IDGR+ANCN+AS GRPR  P
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPR--P

Query:  PISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGP-EYVYPQGGYNPFVG----
        P   G+   P+ +  G      TY    G   P+  A    L YP YGY                            TY P ++ Y Q  YN  +     
Subjt:  PISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGP-EYVYPQGGYNPFVG----

Query:  -QQYLQIYG----VPGSASPTI----YHYGQLGQT--VPGGHGYGAVHGYAMPSPQIVQFSGPN--VNALTSSPMPTIQ
         QQ  Q+YG     P S+  TI    Y+YG   Q   VP  H +     Y        +FS P+  V    SS  P +Q
Subjt:  -QQYLQIYG----VPGSASPTI----YHYGQLGQT--VPGGHGYGAVHGYAMPSPQIVQFSGPN--VNALTSSPMPTIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTATCAGCATATTACGGGTCCTAGTTCGATATCTGGATCAAGCTCGAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACCACCTACACCAAGGTCTTTGTTGG
TGGGTTGGCCTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCCAAAG
GATATGGTTTTGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGATCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGC
CGGCCTCGGCCACCTATATCTTATGGACGTTTAAGACCGCCTACCGTGTTTGTTGGAGGCATGCAACCCAACCGGGGAACTTATATCGGAAATTTTGGCTATCAACAACC
GGTTTCATATGCTTATCAGCAAGGGCTTGCATATCCTCCTTATGGGTATGTCCCTGAGGTTCCTTTTTCTGCATCGAAGCCTGCCAAACACATTCAAATTTCATTATTTT
GTGAGTACCGTAGAAGTTATGCTACTTATGGACCTGAGTATGTCTACCCGCAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTACCTGGG
TCAGCAAGCCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGATATGGAGCAGTACATGGATATGCAATGCCAAGTCCTCAGATCGTGCA
GTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACAATTCAGGCCCCGTATCCTTCAGTTGCCTTGAAAACGTGTTTGTTTCATCAGGGATTCCAGC
ACCTGTTGCAGCACAACCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGAGGAGTTGATCAGGTTATATAGCAGA
ATGATATGGTGCGTTCTGGAGTATGAGTATGACAAAGGTCATAGTCATGCTCACCAGAGACGTCAGATGGTCTTGAGTCGCTCCAGATGGTGGAGAAGGAATATGGAAGA
TGAAGGCTGCTCTTCCTCTAAGACCTTTCTTCTTCCCCAGTGTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTATCAGCATATTACGGGTCCTAGTTCGATATCTGGATCAAGCTCGAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACCACCTACACCAAGGTCTTTGTTGG
TGGGTTGGCCTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCCAAAG
GATATGGTTTTGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGATCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGC
CGGCCTCGGCCACCTATATCTTATGGACGTTTAAGACCGCCTACCGTGTTTGTTGGAGGCATGCAACCCAACCGGGGAACTTATATCGGAAATTTTGGCTATCAACAACC
GGTTTCATATGCTTATCAGCAAGGGCTTGCATATCCTCCTTATGGGTATGTCCCTGAGGTTCCTTTTTCTGCATCGAAGCCTGCCAAACACATTCAAATTTCATTATTTT
GTGAGTACCGTAGAAGTTATGCTACTTATGGACCTGAGTATGTCTACCCGCAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTACCTGGG
TCAGCAAGCCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGATATGGAGCAGTACATGGATATGCAATGCCAAGTCCTCAGATCGTGCA
GTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACAATTCAGGCCCCGTATCCTTCAGTTGCCTTGAAAACGTGTTTGTTTCATCAGGGATTCCAGC
ACCTGTTGCAGCACAACCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGAGGAGTTGATCAGGTTATATAGCAGA
ATGATATGGTGCGTTCTGGAGTATGAGTATGACAAAGGTCATAGTCATGCTCACCAGAGACGTCAGATGGTCTTGAGTCGCTCCAGATGGTGGAGAAGGAATATGGAAGA
TGAAGGCTGCTCTTCCTCTAAGACCTTTCTTCTTCCCCAGTGTTTATAA
Protein sequenceShow/hide protein sequence
MAYQHITGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLG
RPRPPISYGRLRPPTVFVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYVPEVPFSASKPAKHIQISLFCEYRRSYATYGPEYVYPQGGYNPFVGQQYLQIYGVPG
SASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSVALKTCLFHQGFQHLLQHNHSSLFILLLSLYKVAVLTKHLGEELIRLYSR
MIWCVLEYEYDKGHSHAHQRRQMVLSRSRWWRRNMEDEGCSSSKTFLLPQCL