CuGenDBv2

Gene ID	Spg025313
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein GDAP2 homolog
Genome location	scaffold13:42087115..42091241
RNA-Seq Expression	Spg025313
Synteny	Spg025313
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR043472 - Macro domain-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004143794.1 protein GDAP2 homolog isoform X1 [Cucumis sativus]

1.1e-48

93.52

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Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
        MYRTVATSAATTTTTDS+DYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSPSDA+GG+NGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV

Query:  NSTNEGGD
        NSTNE  D
Subjt:  NSTNEGGD

XP_008465697.1 PREDICTED: protein GDAP2 homolog [Cucumis melo]

1.1e-48

93.52

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Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
        MYRTVATSAATTTTTDS+DYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSPSDA+GG+NGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV

Query:  NSTNEGGD
        NSTNE  D
Subjt:  NSTNEGGD

XP_022150324.1 protein GDAP2 homolog [Momordica charantia]

7.0e-48

92.59

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Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
        MYRTV TSAATTTTT+SVDYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSP+D DGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV

Query:  NSTNEGGD
        NSTNE  D
Subjt:  NSTNEGGD

XP_031741406.1 protein GDAP2 homolog isoform X2 [Cucumis sativus]

1.1e-48

93.52

Show/hide

Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
        MYRTVATSAATTTTTDS+DYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSPSDA+GG+NGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV

Query:  NSTNEGGD
        NSTNE  D
Subjt:  NSTNEGGD

XP_038890071.1 protein GDAP2 homolog [Benincasa hispida]

6.4e-49

91.82

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Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
        MYRTVATSAATTTTT+SVDYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSPSDA+GG+NGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV

Query:  NSTNEGGDRI
        NSTNE  D +
Subjt:  NSTNEGGDRI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KS03 Macro domain-containing protein

5.3e-49

93.52

Show/hide

Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
        MYRTVATSAATTTTTDS+DYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSPSDA+GG+NGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV

Query:  NSTNEGGD
        NSTNE  D
Subjt:  NSTNEGGD

A0A1S4E5F4 protein GDAP2 homolog

5.3e-49

93.52

Show/hide

Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
        MYRTVATSAATTTTTDS+DYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSPSDA+GG+NGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV

Query:  NSTNEGGD
        NSTNE  D
Subjt:  NSTNEGGD

A0A6J1D9R1 protein GDAP2 homolog

3.4e-48

92.59

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Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
        MYRTV TSAATTTTT+SVDYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSP+D DGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVV

Query:  NSTNEGGD
        NSTNE  D
Subjt:  NSTNEGGD

A0A6J1G3J6 protein GDAP2 homolog

2.9e-47

92.66

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Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPS-DADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAV
        MYRTVATSAATTTTTD VDYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSPS DA+GG+NGVVSRFPVDHEINSKIYLWRGNPWNLEVDAV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPS-DADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAV

Query:  VNSTNEGGD
        VNSTNE  D
Subjt:  VNSTNEGGD

A0A6J1KAK4 protein GDAP2 homolog

2.9e-47

92.66

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Query:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPS-DADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAV
        MYRTVATSAATTTTTD VDYVVNLDQIPRWSDAEHRSSL+FVNEDPS SNSYFPDPLTSPS DA+GG+NGVVSRFPVDHEINSKIYLWRGNPWNLEVDAV
Subjt:  MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPS-DADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAV

Query:  VNSTNEGGD
        VNSTNE  D
Subjt:  VNSTNEGGD

SwissProt top hits

e value

%identity

Alignment

A7T167 Protein GDAP2 homolog

3.1e-06

33.33

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Query:  VVNLDQIPRWSDAEHRSSLDFVNEDPSSNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVVNSTNE
        +V+++ +P+WS                     P P   P   +  S+  +S FPVD EIN+K+ LW G+   L  DA+VN+TNE
Subjt:  VVNLDQIPRWSDAEHRSSLDFVNEDPSSNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVVNSTNE

Arabidopsis top hits

e value

%identity

Alignment

AT1G43760.1 DNAse I-like superfamily protein

5.4e-06

37.29

Show/hide

Query:  WRQKAKVKWAMDGDCNFSFFHRVSNGRRSKNLINSLMNDRGEVVRGKKEIEEEMLSSFT
        +RQK+++KW  DGD N  FFH+V    ++KNLI  L  D    V    +++E +++ +T
Subjt:  WRQKAKVKWAMDGDCNFSFFHRVSNGRRSKNLINSLMNDRGEVVRGKKEIEEEMLSSFT

AT1G69340.1 appr-1-p processing enzyme family protein

8.3e-31

62.73

Show/hide

Query:  MYRTVATSAATT--TTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDA
        MY+T+ T+      T T+S DYVV LDQIPRWSD E RSSL+    DP  SN  + +PL S S+A    NG+VS+FPVDHEINS+IYLWRG PWNLEVDA
Subjt:  MYRTVATSAATT--TTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPS-SNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDA

Query:  VVNSTNEGGD
        VVNSTNE  D
Subjt:  VVNSTNEGGD

Sequences

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CDS sequence

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ATGTACAGGACAGTGGCTACATCTGCAGCCACAACTACAACAACAGATAGCGTGGATTATGTTGTAAATTTGGATCAAATTCCACGCTGGAGTGATGCAGAACATAGGTC
TTCGTTGGATTTCGTGAACGAAGATCCTTCCTCTAATTCGTACTTTCCTGATCCTCTGACGTCTCCATCTGACGCAGATGGTGGTAGCAATGGAGTGGTTTCGAGATTTC
CCGTCGATCATGAAATTAATTCCAAAATATATCTGTGGAGGGGGAATCCATGGAATCTCGAGGTAGATGCTGTCGTGAATTCTACGAACGAGGGTGGGGATCGAATCATC
AATCTGCAGGATGGCGATGGGGAAATTAATCACTTTGTATTTGCTTGGTATGTATGTACTGGAATAACTAAACGTTTGGGGAGGATGAAGACCATAGATGATATGGAAGA
GGTTGGGATCTTATCTGAGGATCTTAAGGAGGAGCGCATGTCTTTAAGAATCGAGTTTGCTGAGGTAGTGAGGAAAGAGTCCTGTAGTTGGAGGCAGAAGGCTAAAGTGA
AATGGGCTATGGACGGGGATTGTAACTTTTCATTCTTCCATCGGGTGTCTAATGGAAGAAGGAGCAAAAACCTTATCAACTCTTTGATGAATGATCGGGGGGAGGTGGTT
AGAGGGAAGAAGGAGATCGAGGAGGAGATGCTCTCTTCCTTCACAACCGTTTATGCAGGTTGTATAGGGTATGGGTACCTTTTGAGTAGTGAAGTAAGAGGGTCAAGGGG
AGAGAATTAG

mRNA sequence

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Protein sequence

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MYRTVATSAATTTTTDSVDYVVNLDQIPRWSDAEHRSSLDFVNEDPSSNSYFPDPLTSPSDADGGSNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVVNSTNEGGDRII
NLQDGDGEINHFVFAWYVCTGITKRLGRMKTIDDMEEVGILSEDLKEERMSLRIEFAEVVRKESCSWRQKAKVKWAMDGDCNFSFFHRVSNGRRSKNLINSLMNDRGEVV
RGKKEIEEEMLSSFTTVYAGCIGYGYLLSSEVRGSRGEN

Spg025313 (gene) of Sponge gourd (cylindrica) v1 genome