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Spg025370 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025370
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzinc knuckle (CCHC-type) family protein
Genome locationscaffold13:41994857..41996379
RNA-Seq ExpressionSpg025370
SyntenySpg025370
Gene Ontology termsGO:2000767 - positive regulation of cytoplasmic translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0045182 - translation regulator activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040581.1 uncharacterized protein E6C27_scaffold262G001550 [Cucumis melo var. makuwa]1.5e-0797.14Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSEALKAFFSDPENRRKRS AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
XP_004143799.1 uncharacterized protein LOC101211176 [Cucumis sativus]1.5e-0797.14Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSEALKAFFSDPENRRKRS AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
XP_008465679.1 PREDICTED: uncharacterized protein LOC103503314 isoform X2 [Cucumis melo]1.5e-0797.14Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSEALKAFFSDPENRRKRS AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
XP_008465680.1 PREDICTED: uncharacterized protein LOC103503314 isoform X3 [Cucumis melo]1.5e-0797.14Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSEALKAFFSDPENRRKRS AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
XP_022151325.1 uncharacterized protein LOC111019288 [Momordica charantia]1.1e-0794.29Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSE LKAFFSDPENRRKRS+AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
TrEMBL top hitse value%identityAlignment
A0A0A0KS13 Uncharacterized protein7.1e-0897.14Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSEALKAFFSDPENRRKRS AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
A0A1S3CPD5 uncharacterized protein LOC103503314 isoform X37.1e-0897.14Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSEALKAFFSDPENRRKRS AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
A0A1S3CQW6 uncharacterized protein LOC103503314 isoform X17.1e-0897.14Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSEALKAFFSDPENRRKRS AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
A0A5D3C105 Uncharacterized protein7.1e-0897.14Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSEALKAFFSDPENRRKRS AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
A0A6J1DAV1 uncharacterized protein LOC1110192885.4e-0894.29Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKGSAEARKRTSE LKAFFSDPENRRKRS+AMKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G20220.1 zinc knuckle (CCHC-type) family protein6.6e-0662.86Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKG+  ARK  SE++KAFFS+P NR +RS++MKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
AT5G20220.2 zinc knuckle (CCHC-type) family protein6.6e-0662.86Show/hide
Query:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG
        KAKG+  ARK  SE++KAFFS+P NR +RS++MKG
Subjt:  KAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTTTTGCCCCTCCTCTCATATGTTTTGGTGATTGGTGGCCTCACAGATACAAAATATGACCGTACAATATTACCAATTACATTCTGTCACTGTTTGAAAGCCAA
AGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAGTGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGGTGAATCATTGAAGG
GAAAACCTTACCGAGACACATTTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTTTTGCCCCTCCTCTCATATGTTTTGGTGATTGGTGGCCTCACAGATACAAAATATGACCGTACAATATTACCAATTACATTCTGTCACTGTTTGAAAGCCAA
AGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAGTGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGGTGAATCATTGAAGG
GAAAACCTTACCGAGACACATTTGCATAA
Protein sequenceShow/hide protein sequence
MSLLPLLSYVLVIGGLTDTKYDRTILPITFCHCLKAKGSAEARKRTSEALKAFFSDPENRRKRSIAMKGESLKGKPYRDTFA