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Spg025405 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025405
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCalcium-binding EF-hand family protein, putative
Genome locationscaffold13:39571699..39572801
RNA-Seq ExpressionSpg025405
SyntenySpg025405
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR002156 - Ribonuclease H domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060897.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa]5.6e-1872.22Show/hide
Query:  SLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKG
        SL+EEQLA +FKKHD DRD KLTKEEL RAF+ LGSRW+  R K ALRA D NGDG+IS+ E+SKLI YVKG
Subjt:  SLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKG

KAE8652092.1 hypothetical protein Csa_021918 [Cucumis sativus]3.3e-1871.23Show/hide
Query:  SLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKGC
        SL+EEQLA +FKKHD DRD KLTKEEL RAF  LGSRW+  R K A+RA D N DG+ISL E+SKLI YVKGC
Subjt:  SLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKGC

KAG6585663.1 hypothetical protein SDJN03_18396, partial [Cucurbita argyrosperma subsp. sororia]7.3e-1872.46Show/hide
Query:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVK
        TEEQLA++FK HDRD DGKL+KEELK+AF  LGSR+S FR K ALRAADTNGDG IS+ E++KLI Y K
Subjt:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVK

KAG7020566.1 hypothetical protein SDJN02_17252, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-1872.86Show/hide
Query:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKG
        TEEQLA++FK HDRD DGKL+KEELK+AF  LGSR+S FR K ALRAADTNGDG IS+ E++KLI Y KG
Subjt:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKG

KAG7020569.1 hypothetical protein SDJN02_17255, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-1872.86Show/hide
Query:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKG
        TEEQLA++FK HDRD DGKL+KEELK+AF  LGSR+S FR K ALRAADTNGDG IS+ E++KLI Y KG
Subjt:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKG

TrEMBL top hitse value%identityAlignment
A0A061ECW3 Calcium-binding EF-hand family protein, putative9.9e-1351.69Show/hide
Query:  HVSGHK----TILSGCSLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKGC
        H+ GHK    T LS    TE QL SVF++ D +RDG+L+++EL+ AF SLGSR+  +RA AAL  AD NGDG IS  E+  LI Y   C
Subjt:  HVSGHK----TILSGCSLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKGC

A0A0A0LL93 Uncharacterized protein1.6e-1871.23Show/hide
Query:  SLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKGC
        SL+EEQLA +FKKHD DRD KLTKEEL RAF  LGSRW+  R K A+RA D N DG+ISL E+SKLI YVKGC
Subjt:  SLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKGC

A0A0A0LRB6 Uncharacterized protein3.9e-1771.01Show/hide
Query:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVK
        +EEQLA+VFK HDRD DG LTKEELK+AFE LGSR+  FR + ALRAADTNGDG+IS+ E+ KLI Y K
Subjt:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVK

A0A5A7V219 Putative calcium-binding protein CML102.7e-1872.22Show/hide
Query:  SLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKG
        SL+EEQLA +FKKHD DRD KLTKEEL RAF+ LGSRW+  R K ALRA D NGDG+IS+ E+SKLI YVKG
Subjt:  SLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVKG

A0A5A7V5B0 Putative Calcium-binding EF-hand family protein7.8e-1872.46Show/hide
Query:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVK
        +EEQLA+VFK HDRD DG LTKEELK+AFE LGSR+S FR + ALRAADTNGDG+IS+ E+ KLI Y K
Subjt:  TEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYVK

SwissProt top hitse value%identityAlignment
A0T2M3 Polcalcin Cup a 42.5e-0539.47Show/hide
Query:  KTILSGCSLTEE---QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKL
        K+  SG  + E+   +L  VFKK D + DGK++  EL     S+GS   +   KA +  ADT+GDG +SL E   L
Subjt:  KTILSGCSLTEE---QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKL

O64943 Polcalcin Jun o 23.3e-0539.74Show/hide
Query:  GHKTILSGCSLTEE---QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKL
        G K+  SG  + E+   +L  VFKK D + DGK++  EL     SLGS   +   KA +  AD +GDG +SL E   L
Subjt:  GHKTILSGCSLTEE---QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKL

P05933 Calmodulin6.6e-0642.19Show/hide
Query:  EEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI
        EE++   FK  D+D +G +T EEL     SLG R S+      +R ADT+GDG+I+  E S++I
Subjt:  EEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI

Q9SRE6 Calcium-binding protein CML386.0e-0743.55Show/hide
Query:  QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI
        +L +VF   D +RDG+++ EEL+++F +LG + S   A AA+R +DT+GDG++   E S+LI
Subjt:  QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI

Q9SRE7 Calcium-binding protein CML391.3e-0640.98Show/hide
Query:  LASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI
        L +VF   D +RDG+++ EELK++F++LG + S   A+AA++ +D +GDG++ + E + LI
Subjt:  LASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI

Arabidopsis top hitse value%identityAlignment
AT1G18530.1 EF hand calcium-binding protein family5.2e-0636.36Show/hide
Query:  LTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI
        +  EQL  +FK  DRD +G ++  EL  A   +G   +       ++ ADTNGDG+IS GE + ++
Subjt:  LTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI

AT1G76640.1 Calcium-binding EF-hand family protein9.5e-0840.98Show/hide
Query:  LASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI
        L +VF   D +RDG+++ EELK++F++LG + S   A+AA++ +D +GDG++ + E + LI
Subjt:  LASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI

AT1G76650.1 calmodulin-like 384.3e-0843.55Show/hide
Query:  QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI
        +L +VF   D +RDG+++ EEL+++F +LG + S   A AA+R +DT+GDG++   E S+LI
Subjt:  QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI

AT1G76650.3 calmodulin-like 384.3e-0843.55Show/hide
Query:  QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI
        +L +VF   D +RDG+++ EEL+++F +LG + S   A AA+R +DT+GDG++   E S+LI
Subjt:  QLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLI

AT3G59440.1 Calcium-binding EF-hand family protein2.9e-0434.38Show/hide
Query:  LASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYV
        L  VF+  D++ DG++TKEEL  + E+LG           ++  D NGDG + + E   L G +
Subjt:  LASVFKKHDRDRDGKLTKEELKRAFESLGSRWSKFRAKAALRAADTNGDGLISLGEISKLIGYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATCGGAGAAATTCAGGTATTGGAGTGGTTCTGCGAGATAAAGGGGGTTTGCTTAAGACAGTGCAGAATTCATCATCTTTGGTGACCAACTCTCCTTTGGAAGC
GGAAGCAGTGGCGGTTCTTGAAGGATTGCGACTGGCTAGGGAATTGGATGTCTTTCTTCTTCACCATGTATCTGGTCACAAAACTATCCTCAGTGGATGTTCGTTGACTG
AAGAGCAGCTGGCCTCTGTTTTCAAAAAACACGACAGGGACAGAGACGGGAAGCTGACCAAAGAAGAGTTGAAGAGAGCCTTCGAGTCTTTGGGTTCGAGGTGGAGCAAG
TTCAGAGCCAAGGCAGCCCTTCGCGCCGCCGATACTAACGGCGACGGTCTCATCAGTTTGGGGGAGATAAGCAAGCTCATCGGATATGTCAAAGGTTGTAATCGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATCGGAGAAATTCAGGTATTGGAGTGGTTCTGCGAGATAAAGGGGGTTTGCTTAAGACAGTGCAGAATTCATCATCTTTGGTGACCAACTCTCCTTTGGAAGC
GGAAGCAGTGGCGGTTCTTGAAGGATTGCGACTGGCTAGGGAATTGGATGTCTTTCTTCTTCACCATGTATCTGGTCACAAAACTATCCTCAGTGGATGTTCGTTGACTG
AAGAGCAGCTGGCCTCTGTTTTCAAAAAACACGACAGGGACAGAGACGGGAAGCTGACCAAAGAAGAGTTGAAGAGAGCCTTCGAGTCTTTGGGTTCGAGGTGGAGCAAG
TTCAGAGCCAAGGCAGCCCTTCGCGCCGCCGATACTAACGGCGACGGTCTCATCAGTTTGGGGGAGATAAGCAAGCTCATCGGATATGTCAAAGGTTGTAATCGCTAA
Protein sequenceShow/hide protein sequence
MGNRRNSGIGVVLRDKGGLLKTVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVFLLHHVSGHKTILSGCSLTEEQLASVFKKHDRDRDGKLTKEELKRAFESLGSRWSK
FRAKAALRAADTNGDGLISLGEISKLIGYVKGCNR