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Spg025426 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025426
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionpsbP domain-containing protein 3, chloroplastic
Genome locationscaffold13:41659518..41662137
RNA-Seq ExpressionSpg025426
SyntenySpg025426
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647284.1 hypothetical protein Csa_002893 [Cucumis sativus]2.2e-0947.66Show/hide
Query:  QKDKCRTLYKENPSLIFEWTKS--MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDI
        ++DK   LYKENPSLIFEWT S  MASL SPSAVI  P S RF++SSL NG           F+                  IPIRS LRVFCS     I
Subjt:  QKDKCRTLYKENPSLIFEWTKS--MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDI

Query:  --SNRQP
          SN++P
Subjt:  --SNRQP

KAG7030019.1 PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-0851.85Show/hide
Query:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP
        MASLPSPSAVIQ PRSWRFT SSL N                             GIAIPIR+RLRVFCS KN DI +++P
Subjt:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP

XP_022946502.1 psbP domain-containing protein 3, chloroplastic [Cucurbita moschata]1.9e-0851.85Show/hide
Query:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP
        MASLPSPSAVIQ PRSWRFT SSL N                             GIAIPIR+RLRVFCS KN DI +++P
Subjt:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP

XP_022999754.1 psbP domain-containing protein 3, chloroplastic [Cucurbita maxima]1.9e-0851.85Show/hide
Query:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP
        MASLPSPSAVIQ PRSWRFT SSL N                             GIAIPIR+RLRVFCS KN DI +++P
Subjt:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP

XP_023546046.1 psbP domain-containing protein 3, chloroplastic [Cucurbita pepo subsp. pepo]1.9e-0851.85Show/hide
Query:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP
        MASLPSPSAVIQ PRSWRFT SSL N                             GIAIPIR+RLRVFCS KN DI +++P
Subjt:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP

TrEMBL top hitse value%identityAlignment
A0A6J1G3W9 psbP domain-containing protein 3, chloroplastic9.0e-0951.85Show/hide
Query:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP
        MASLPSPSAVIQ PRSWRFT SSL N                             GIAIPIR+RLRVFCS KN DI +++P
Subjt:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP

A0A6J1KI01 psbP domain-containing protein 3, chloroplastic9.0e-0951.85Show/hide
Query:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP
        MASLPSPSAVIQ PRSWRFT SSL N                             GIAIPIR+RLRVFCS KN DI +++P
Subjt:  MASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTATGAACAATGTTCTCGAAACCTTTGTAAACCCATTATGTGTGGAATCATATGCTATTTTAGAGAGGTTTCGCATTCGCTTGGGTCATAGAATGACCTTGAG
GCGGATTAAAGTCTTTGATTCACTTTCTCTAGTGTTGATTGTGAGGAAAGAGAGTGATACTTATGTTGAGGTGGCCTCTTATATCATTTGGGATATTGAAGCGATTACAA
GTTGCTTTGAGTCGGTTGATTTCATCTATGTGAATAGATGTTATAATGTGATGGCTCGTCAAAAGGACAAATGTCGCACATTGTACAAAGAAAATCCATCTCTAATCTTC
GAGTGGACTAAAAGCATGGCGTCCCTTCCTTCACCGAGCGCTGTAATCCAACCTCCTCGCTCATGGCGCTTCACAGAATCATCACTCTGCAATGGTAATCCTTCTCTACT
CTACTCACCTTCCTCGCCTTTCACTTCATGCGCCATTTTAAAATCCTATCTTCTTCCTTCTTCAATTTCAGGAATCGCCATTCCCATCCGTTCGAGACTCCGTGTCTTCT
GCTCTTGCAAGAACACCGACATTTCCAATCGACAACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTATGAACAATGTTCTCGAAACCTTTGTAAACCCATTATGTGTGGAATCATATGCTATTTTAGAGAGGTTTCGCATTCGCTTGGGTCATAGAATGACCTTGAG
GCGGATTAAAGTCTTTGATTCACTTTCTCTAGTGTTGATTGTGAGGAAAGAGAGTGATACTTATGTTGAGGTGGCCTCTTATATCATTTGGGATATTGAAGCGATTACAA
GTTGCTTTGAGTCGGTTGATTTCATCTATGTGAATAGATGTTATAATGTGATGGCTCGTCAAAAGGACAAATGTCGCACATTGTACAAAGAAAATCCATCTCTAATCTTC
GAGTGGACTAAAAGCATGGCGTCCCTTCCTTCACCGAGCGCTGTAATCCAACCTCCTCGCTCATGGCGCTTCACAGAATCATCACTCTGCAATGGTAATCCTTCTCTACT
CTACTCACCTTCCTCGCCTTTCACTTCATGCGCCATTTTAAAATCCTATCTTCTTCCTTCTTCAATTTCAGGAATCGCCATTCCCATCCGTTCGAGACTCCGTGTCTTCT
GCTCTTGCAAGAACACCGACATTTCCAATCGACAACCCTGA
Protein sequenceShow/hide protein sequence
MAAMNNVLETFVNPLCVESYAILERFRIRLGHRMTLRRIKVFDSLSLVLIVRKESDTYVEVASYIIWDIEAITSCFESVDFIYVNRCYNVMARQKDKCRTLYKENPSLIF
EWTKSMASLPSPSAVIQPPRSWRFTESSLCNGNPSLLYSPSSPFTSCAILKSYLLPSSISGIAIPIRSRLRVFCSCKNTDISNRQP