CuGenDBv2

Gene ID	Spg025445
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box protein GID2-like
Genome location	scaffold13:40047795..40048783
RNA-Seq Expression	Spg025445
Synteny	Spg025445
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-48

83.48

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQWYKTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEI
        +IGSA C PWGKDE+
Subjt:  MIGSAPCNPWGKDEI

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

7.6e-44

77.87

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Query:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS
        N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHS
Subjt:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS

Query:  LYPFAPMIGSAPCN-PWGKDEI
        LYPF PMIG   CN PWGKDE+
Subjt:  LYPFAPMIGSAPCN-PWGKDEI

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

9.6e-47

81.74

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQW KTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEI
        ++GSA C PWGKDE+
Subjt:  MIGSAPCNPWGKDEI

XP_022996700.1 F-box protein GID2-like [Cucurbita maxima]

8.1e-46

80.87

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  QEQ  PP   + FANLDD+LLFEVFKHVDARTLATA+ VSKQWYKTAHDE LWEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEI
        +IGSA C  WGK E+
Subjt:  MIGSAPCNPWGKDEI

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

1.7e-48

83.62

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Query:  MKKIKSDFQEQ---PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFA
        MKKIKS  QEQ   PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQWYKTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF 
Subjt:  MKKIKSDFQEQ---PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFA

Query:  PMIGSAPCNPWGKDEI
        P+IGSA C PWGKDE+
Subjt:  PMIGSAPCNPWGKDEI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

8.2e-44

75.83

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Query:  NPMKKIKSDFQEQPP----VPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY
        N +KK KS   +Q P      P+ FANLDD+LLFEVFKHVDARTLAT A VSKQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLY
Subjt:  NPMKKIKSDFQEQPP----VPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY

Query:  PFAPMIGSAPCN-PWGKDEI
        PF PMIG   CN PWGKDE+
Subjt:  PFAPMIGSAPCN-PWGKDEI

A0A1S3BDV6 F-box protein GID2-like

3.7e-44

77.87

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Query:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS
        N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHS
Subjt:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS

Query:  LYPFAPMIGSAPCN-PWGKDEI
        LYPF PMIG   CN PWGKDE+
Subjt:  LYPFAPMIGSAPCN-PWGKDEI

A0A5A7V5E1 F-box protein GID2-like

3.7e-44

77.87

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Query:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS
        N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHS
Subjt:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS

Query:  LYPFAPMIGSAPCN-PWGKDEI
        LYPF PMIG   CN PWGKDE+
Subjt:  LYPFAPMIGSAPCN-PWGKDEI

A0A6J1HCI1 F-box protein GID2-like

4.6e-47

81.74

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQW KTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEI
        ++GSA C PWGKDE+
Subjt:  MIGSAPCNPWGKDEI

A0A6J1K7I7 F-box protein GID2-like

3.9e-46

80.87

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  QEQ  PP   + FANLDD+LLFEVFKHVDARTLATA+ VSKQWYKTAHDE LWEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEI
        +IGSA C  WGK E+
Subjt:  MIGSAPCNPWGKDEI

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

4.2e-21

56.47

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Query:  EQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY
        EQP VP     +L +DL+FEV +  +ARTLA AA VS+ W + A DERLWE  C + WAN+G + +QLR+VVL+LGGFRRLH++Y
Subjt:  EQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY

Q9LUB6 F-box protein SNE

2.0e-07

30.84

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Query:  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEIAQ
        P    N   D+L E+ + +D  +L +AA V + W   A ++ +WE +C +  +     +  LRSVV ALGG+R L+ L    P++   P   W +D++ Q
Subjt:  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEIAQ

Query:  RNFRRFC
         +   +C
Subjt:  RNFRRFC

Q9STX3 F-box protein GID2

8.2e-33

61.61

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Query:  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG
        KK+KS  +E+      GF+NLD++L++EV KHVDA+TLA ++ VSK W+KTA DERLWELICT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+  
Subjt:  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG

Query:  SAPCNPWGKDEI
          P   +GKDE+
Subjt:  SAPCNPWGKDEI

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

6.3e-04

31.94

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Query:  PVPPTGFAN-------------LDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIG
        PVPP G  +             L D+LLFEVF  +    L  A+ V ++W  T  +   W   C K W   G
Subjt:  PVPPTGFAN-------------LDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIG

AT4G24210.1 F-box family protein

5.8e-34

61.61

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Query:  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG
        KK+KS  +E+      GF+NLD++L++EV KHVDA+TLA ++ VSK W+KTA DERLWELICT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+  
Subjt:  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG

Query:  SAPCNPWGKDEI
          P   +GKDE+
Subjt:  SAPCNPWGKDEI

AT5G48170.1 F-box family protein

1.4e-08

30.84

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Query:  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEIAQ
        P    N   D+L E+ + +D  +L +AA V + W   A ++ +WE +C +  +     +  LRSVV ALGG+R L+ L    P++   P   W +D++ Q
Subjt:  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEIAQ

Query:  RNFRRFC
         +   +C
Subjt:  RNFRRFC

Sequences

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CDS sequence

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ATGAAGAAGCGCCCTCTTTCCCACCAAGATTCCTTCAATCCCATGAAGAAAATCAAGTCAGATTTTCAGGAACAACCACCAGTACCACCAACTGGGTTTGCTAATTTAGA
CGACGATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCGGCCGCCGTCAGCAAGCAGTGGTACAAAACGGCGCACGACGAGCGCCTCTGGG
AGCTCATCTGCACCAAACACTGGGCCAACATCGGCTGTGCCAACCAACAGCTACGCTCCGTCGTGCTCGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTT
GCGCCGATGATTGGATCGGCGCCCTGTAATCCATGGGGGAAAGACGAGATTGCTCAGAGGAATTTCCGGAGGTTCTGTTCTGCGTGCTTCCTTTCCCACTGGGAGAAGAC
CCACAAACTCGTTTCAATGGTTCTGTACCAAAATAGTTCATCGTTTTGCGTCAAATCATGGGGTCCTAAATTACAAGTTGAGAAGGGAAAAAGTCGATGGGGTCTCATAG
ATTCACAGACATAG

mRNA sequence

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Protein sequence

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MKKRPLSHQDSFNPMKKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF
APMIGSAPCNPWGKDEIAQRNFRRFCSACFLSHWEKTHKLVSMVLYQNSSSFCVKSWGPKLQVEKGKSRWGLIDSQT

Spg025445 (gene) of Sponge gourd (cylindrica) v1 genome