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Spg025458 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025458
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNucleic acid-binding, OB-fold-like protein
Genome locationscaffold13:28961344..28963344
RNA-Seq ExpressionSpg025458
SyntenySpg025458
Gene Ontology termsGO:0018343 - protein farnesylation (biological process)
GO:0005965 - protein farnesyltransferase complex (cellular component)
GO:0004660 - protein farnesyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585156.1 hypothetical protein SDJN03_17889, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2390.48Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +DLMKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKE+NNLSL+E+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

XP_022131585.1 uncharacterized protein At4g28440-like [Momordica charantia]2.2e-2390.48Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +D+MKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKEDNNLSL+E+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

XP_022726335.1 uncharacterized protein At4g28440-like [Durio zibethinus]2.2e-2392.06Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +DLMKEGATVILRNAKIDMFKG MRLAVD+WGRVEVTEPASFTVKEDNNLSL+E+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

XP_022951207.1 uncharacterized protein At4g28440-like [Cucurbita moschata]3.8e-2390.48Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +DLMKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKE+NNLSL+E+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

XP_030959215.1 uncharacterized protein At4g28440-like, partial [Quercus lobata]5.0e-2382.19Show/hide
Query:  VDEIYL-----DLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +D IYL     DLMKEG+TVILRNAKIDMFKG MRLAVD+WGRVEVTEPA FTVKEDNNLSL+E+ELVNVVEE
Subjt:  VDEIYL-----DLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

TrEMBL top hitse value%identityAlignment
A0A6J1BQ40 uncharacterized protein At4g28440-like1.1e-2390.48Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +D+MKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKEDNNLSL+E+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

A0A6J1GH14 uncharacterized protein At4g28440-like1.9e-2390.48Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +DLMKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKE+NNLSL+E+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

A0A6J1KS21 uncharacterized protein At4g28440-like1.9e-2390.48Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +DLMKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKE+NNLSL+E+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

A0A6P5XDC7 uncharacterized protein At4g28440-like1.1e-2392.06Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        +DLMKEGATVILRNAKIDMFKG MRLAVD+WGRVEVTEPASFTVKEDNNLSL+E+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

A0A7N2L8Q2 Uncharacterized protein1.1e-2389.06Show/hide
Query:  YLDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        Y+DLMKEG+TVILRNAKIDMFKG MRLAVD+WGRVEVTEPA FTVKEDNNLSL+E+ELVNVVEE
Subjt:  YLDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284401.4e-2078.33Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV
        +DLMK GATVILRN++IDMFKG MRL VD+WGR+E T  ASFTVKEDNNLSLVE+EL+NV
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.2e-1973.77Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVT-EPASFTVKEDNNLSLVEFELVNV
        +D+MKEG+ V LRNAKIDM+KG MRLAVDRWGRVEV  EP   TVK+DNNLSL+E+ELV+V
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVT-EPASFTVKEDNNLSLVEFELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein1.2e-1973.77Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVT-EPASFTVKEDNNLSLVEFELVNV
        +D+MKEG+ V LRNAKIDM+KG MRLAVDRWGRVEV  EP   TVK+DNNLSL+E+ELV+V
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVT-EPASFTVKEDNNLSLVEFELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein6.3e-2482.26Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVE
        +DLMKEG+TV LRNAKIDM+KG MRLAVD+WGRVEVTEPASF VKED N+SL+E+ELVNVVE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein8.2e-2482.54Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
        ++LMK GATV LRNAKIDMFKG MRLAVD+WGR+E TEPA  TVKEDNNLSLVE+ELVNVVEE
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein1.0e-2178.33Show/hide
Query:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV
        +DLMK GATVILRN++IDMFKG MRL VD+WGR+E T  ASFTVKEDNNLSLVE+EL+NV
Subjt:  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACACTTCTGTGGTGTAGATGAAATTTATCTGGACTTGATGAAAGAAGGTGCTACCGTGATACTGCGCAATGCTAAGATAGACATGTTTAAAGGATTTATGAGACT
TGCTGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCGAGTTTTACTGTTAAGGAGGATAACAATCTTTCACTCGTTGAATTTGAACTTGTGAATGTCGTGGAAG
AGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACACTTCTGTGGTGTAGATGAAATTTATCTGGACTTGATGAAAGAAGGTGCTACCGTGATACTGCGCAATGCTAAGATAGACATGTTTAAAGGATTTATGAGACT
TGCTGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCGAGTTTTACTGTTAAGGAGGATAACAATCTTTCACTCGTTGAATTTGAACTTGTGAATGTCGTGGAAG
AGTGA
Protein sequenceShow/hide protein sequence
MTHFCGVDEIYLDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE