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Spg025482 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025482
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:29593011..29594497
RNA-Seq ExpressionSpg025482
SyntenySpg025482
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4366740.1 hypothetical protein F8388_020102 [Cannabis sativa]1.2e-1735.88Show/hide
Query:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD
        E  L Q  TS S  P+     W PPP  F+ +NTDA+        G+ A+ R++ G +IVA +V+    M  ++AE  AI  GLK+A     S + V SD
Subjt:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD

Query:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS
        S+  I  I     + +D   LV++I  +  HF+ I F F  RNCNK A+ +A+ +++ +  E W D  PS
Subjt:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS

KAF4402259.1 hypothetical protein G4B88_017771 [Cannabis sativa]1.2e-1735.88Show/hide
Query:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD
        E  L Q  TS S  P+     W PPP  F+ +NTDA+        G+ A+ R++ G +IVA +V+    M  ++AE  AI  GLK+A     S + V SD
Subjt:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD

Query:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS
        S+  I  I     + +D   LV++I  +  HF+ I F F  RNCNK A+ +A+ +++ +  E W D  PS
Subjt:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS

XP_021809818.1 uncharacterized protein LOC110753261 [Prunus avium]2.0e-1734.15Show/hide
Query:  PACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITK-KFEAWSD
        P+ WSPPP G +KLN DAA       +G+ A+ R+  GE++ A ++ L     +  AE+ A+  G+  A   G S   +ESDS+  +  + K + E+W+ 
Subjt:  PACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITK-KFEAWSD

Query:  VEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNE--TWVDRFPSWLCTKVDFD
           L++ I   L HF +++  F+PR CN+ AH +AR    + C+   TW++  P WL + V+ D
Subjt:  VEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNE--TWVDRFPSWLCTKVDFD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.5e-2233.48Show/hide
Query:  SDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKN-SPNEVDLQQLGTSTSISPAC--WSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVAS
        +D+    HG+ + P+  K + +  +LDS+ +A   N SP         T ++  P    W P      KLNTDAAC  +  +T    + RD    ++ A+
Subjt:  SDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKN-SPNEVDLQQLGTSTSISPAC--WSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVAS

Query:  SVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARM-TKIMRCN
        S+ + FP+   +AE++ I EGLK A+    ++L+VESDS LAI+ I  +     D +  V  I  +   F  ISF  + R CN+AAHG+A+         
Subjt:  SVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARM-TKIMRCN

Query:  ETWVDRFPSWLCTKV--DFDRSFLAHV
          W+  FP+WL   V  DF  +F AHV
Subjt:  ETWVDRFPSWLCTKV--DFDRSFLAHV

XP_030497957.1 uncharacterized protein LOC115713607 [Cannabis sativa]4.4e-1736.24Show/hide
Query:  WSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEAL
        W PPP  F+ +NTDA+        G+ A+ R++ G +IVA +V+    M  ++AE  AI  GLK+A     S + V SDS+  I  I     + +D   L
Subjt:  WSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEAL

Query:  VESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS
        V++I  +  HF+ I F F  RNCNK A+ +A+ +++ +  E W D  PS
Subjt:  VESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248741.7e-2233.48Show/hide
Query:  SDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKN-SPNEVDLQQLGTSTSISPAC--WSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVAS
        +D+    HG+ + P+  K + +  +LDS+ +A   N SP         T ++  P    W P      KLNTDAAC  +  +T    + RD    ++ A+
Subjt:  SDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKN-SPNEVDLQQLGTSTSISPAC--WSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVAS

Query:  SVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARM-TKIMRCN
        S+ + FP+   +AE++ I EGLK A+    ++L+VESDS LAI+ I  +     D +  V  I  +   F  ISF  + R CN+AAHG+A+         
Subjt:  SVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARM-TKIMRCN

Query:  ETWVDRFPSWLCTKV--DFDRSFLAHV
          W+  FP+WL   V  DF  +F AHV
Subjt:  ETWVDRFPSWLCTKV--DFDRSFLAHV

A0A6P5S7Q3 uncharacterized protein LOC1107532619.7e-1834.15Show/hide
Query:  PACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITK-KFEAWSD
        P+ WSPPP G +KLN DAA       +G+ A+ R+  GE++ A ++ L     +  AE+ A+  G+  A   G S   +ESDS+  +  + K + E+W+ 
Subjt:  PACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITK-KFEAWSD

Query:  VEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNE--TWVDRFPSWLCTKVDFD
           L++ I   L HF +++  F+PR CN+ AH +AR    + C+   TW++  P WL + V+ D
Subjt:  VEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNE--TWVDRFPSWLCTKVDFD

A0A7J6FAF0 RNase H domain-containing protein5.7e-1835.88Show/hide
Query:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD
        E  L Q  TS S  P+     W PPP  F+ +NTDA+        G+ A+ R++ G +IVA +V+    M  ++AE  AI  GLK+A     S + V SD
Subjt:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD

Query:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS
        S+  I  I     + +D   LV++I  +  HF+ I F F  RNCNK A+ +A+ +++ +  E W D  PS
Subjt:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS

A0A7J6I5F6 RNase H domain-containing protein5.7e-1835.88Show/hide
Query:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD
        E  L Q  TS S  P+     W PPP  F+ +NTDA+        G+ A+ R++ G +IVA +V+    M  ++AE  AI  GLK+A     S + V SD
Subjt:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD

Query:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS
        S+  I  I     + +D   LV++I  +  HF+ I F F  RNCNK A+ +A+ +++ +  E W D  PS
Subjt:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS

A0A803PDB4 Uncharacterized protein5.7e-1835.88Show/hide
Query:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD
        E  L Q  TS S  P+     W PPP  F+ +NTDA+        G+ A+ R++ G +IVA +V+    M  ++AE  AI  GLK+A     S + V SD
Subjt:  EVDLQQLGTSTSISPA----CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESD

Query:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS
        S+  I  I     + +D   LV++I  +  HF+ I F F  RNCNK A+ +A+ +++ +  E W D  PS
Subjt:  SELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGCCTTCGTCCATGGCTCGCAATTTCATATCCGACAAGAAAAAATTTAACCACGGGGAACCAATCCCTCCTATCGCTATTAAAAGCAAATTGATCAAAGATTA
CCTCGACTCCTATTGGCGTGCAAGCTCTAAGAATTCCCCAAACGAGGTGGATCTGCAACAATTGGGAACTTCCACTTCGATTTCGCCTGCATGTTGGTCTCCACCCCCAG
ATGGTTTTTGGAAGCTAAATACCGATGCTGCTTGCTCTGATTCTCCTCCAGCGACTGGATTGGTTGCTTTGTGTAGAGATAAGGGTGGAGAAATTATAGTTGCTTCCTCT
GTTTTCCTTGATTTTCCCATGGAAGCTCATATGGCGGAACTAAAAGCGATATTCGAAGGATTGAAAATGGCAAGTTTTTTAGGTTGTTCATACCTTAAGGTGGAATCAGA
TAGTGAGCTGGCAATAAAATTCATTACAAAGAAATTTGAGGCCTGGAGTGATGTGGAAGCCCTAGTGGAATCTATCTGGGGAATGTTGCCACATTTCAGGGATATTTCTT
TTAAATTTACTCCTAGAAATTGTAATAAGGCAGCCCATGGTATAGCTAGAATGACAAAAATTATGAGATGTAATGAAACTTGGGTTGATCGATTCCCAAGTTGGTTGTGT
ACTAAGGTCGACTTCGACCGATCTTTCCTTGCCCATGTGGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTGCCTTCGTCCATGGCTCGCAATTTCATATCCGACAAGAAAAAATTTAACCACGGGGAACCAATCCCTCCTATCGCTATTAAAAGCAAATTGATCAAAGATTA
CCTCGACTCCTATTGGCGTGCAAGCTCTAAGAATTCCCCAAACGAGGTGGATCTGCAACAATTGGGAACTTCCACTTCGATTTCGCCTGCATGTTGGTCTCCACCCCCAG
ATGGTTTTTGGAAGCTAAATACCGATGCTGCTTGCTCTGATTCTCCTCCAGCGACTGGATTGGTTGCTTTGTGTAGAGATAAGGGTGGAGAAATTATAGTTGCTTCCTCT
GTTTTCCTTGATTTTCCCATGGAAGCTCATATGGCGGAACTAAAAGCGATATTCGAAGGATTGAAAATGGCAAGTTTTTTAGGTTGTTCATACCTTAAGGTGGAATCAGA
TAGTGAGCTGGCAATAAAATTCATTACAAAGAAATTTGAGGCCTGGAGTGATGTGGAAGCCCTAGTGGAATCTATCTGGGGAATGTTGCCACATTTCAGGGATATTTCTT
TTAAATTTACTCCTAGAAATTGTAATAAGGCAGCCCATGGTATAGCTAGAATGACAAAAATTATGAGATGTAATGAAACTTGGGTTGATCGATTCCCAAGTTGGTTGTGT
ACTAAGGTCGACTTCGACCGATCTTTCCTTGCCCATGTGGTGTAA
Protein sequenceShow/hide protein sequence
MSLPSSMARNFISDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASS
VFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPSWLC
TKVDFDRSFLAHVV