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Spg025490 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025490
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein FAR-RED ELONGATED HYPOCOTYL 3-like
Genome locationscaffold13:31875762..31881411
RNA-Seq ExpressionSpg025490
SyntenySpg025490
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039149.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]4.0e-1446.99Show/hide
Query:  VSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT
        +SK+ SNF + V DMFSSK + +  I++I +RDNFQ+  VKSN++ +++QC +E+C+W LRAS       + WV+ RFD +HT
Subjt:  VSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT

KAA0060121.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]2.3e-1446.99Show/hide
Query:  VSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT
        +SK+ SNF + V DMFS+K + +  +++IAIRDNFQ+  VKSN++ +++QC +E+C+W LRAS       + WV+ RFD++HT
Subjt:  VSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT

XP_008452162.1 PREDICTED: uncharacterized protein LOC103493267 [Cucumis melo]1.9e-1646.15Show/hide
Query:  GRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT
        GRFF  +D+SK+ SNF + V DMFS+K + +  ++ IA+RDNFQ+ T+KSN + +++QCV+E+C+W L AS       + WV+ RFD++ T
Subjt:  GRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT

XP_022134813.1 uncharacterized protein LOC111006994 [Momordica charantia]2.3e-2250Show/hide
Query:  PLTATDS--NELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKR
        P+  + S  N +   G+F+  IDV+ +S+ F I V+D F  K  LQNA+RS+AIR NF F+TVKSNR+ L+V C+  +C+WFL AS+FGD GS  W+VK+
Subjt:  PLTATDS--NELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKR

Query:  FDNDHT
        F ++HT
Subjt:  FDNDHT

XP_022155207.1 uncharacterized protein LOC111022347 [Momordica charantia]2.3e-2250Show/hide
Query:  PLTATDS--NELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKR
        P+  + S  N +   G+F ++IDV+ +  NF I V+D F  K  LQNA+RS+AIRDNFQF+T+KSNRD L+V+  +++C+W+L AS+FGD GS  W+VK+
Subjt:  PLTATDS--NELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKR

Query:  FDNDHT
        F  +HT
Subjt:  FDNDHT

TrEMBL top hitse value%identityAlignment
A0A1S3BT85 uncharacterized protein LOC1034932679.2e-1746.15Show/hide
Query:  GRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT
        GRFF  +D+SK+ SNF + V DMFS+K + +  ++ IA+RDNFQ+ T+KSN + +++QCV+E+C+W L AS       + WV+ RFD++ T
Subjt:  GRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT

A0A5A7TCZ3 Protein FAR-RED ELONGATED HYPOCOTYL 3-like1.9e-1446.99Show/hide
Query:  VSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT
        +SK+ SNF + V DMFSSK + +  I++I +RDNFQ+  VKSN++ +++QC +E+C+W LRAS       + WV+ RFD +HT
Subjt:  VSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT

A0A5A7V2Y2 Protein FAR-RED ELONGATED HYPOCOTYL 3-like1.1e-1446.99Show/hide
Query:  VSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT
        +SK+ SNF + V DMFS+K + +  +++IAIRDNFQ+  VKSN++ +++QC +E+C+W LRAS       + WV+ RFD++HT
Subjt:  VSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT

A0A6J1C328 uncharacterized protein LOC1110069941.1e-2250Show/hide
Query:  PLTATDS--NELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKR
        P+  + S  N +   G+F+  IDV+ +S+ F I V+D F  K  LQNA+RS+AIR NF F+TVKSNR+ L+V C+  +C+WFL AS+FGD GS  W+VK+
Subjt:  PLTATDS--NELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKR

Query:  FDNDHT
        F ++HT
Subjt:  FDNDHT

A0A6J1DNQ8 uncharacterized protein LOC1110223471.1e-2250Show/hide
Query:  PLTATDS--NELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKR
        P+  + S  N +   G+F ++IDV+ +  NF I V+D F  K  LQNA+RS+AIRDNFQF+T+KSNRD L+V+  +++C+W+L AS+FGD GS  W+VK+
Subjt:  PLTATDS--NELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTVKSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKR

Query:  FDNDHT
        F  +HT
Subjt:  FDNDHT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCATCGAGTTTCGATCCTATACGATAGCGTTTGGGCATTGATTCCGTCACAGACCTTATTAGACTTGATGCTCGAAAGAAAATTTCACAGATCTACTAATGG
TGAAGACAAGTTTCAGATTATAAGCTTTTCTGAGAACAAAGATCTTGTCTGGATGTTCGCTGGGGTATATAACAGGATGTACCATAATTGTTTCCTTGTCGTATATGTTG
AAAGTGTGGATACTAGTATCCATAGGGACGATGCAAACCTGAATTCAACAGAAAATACAAACAACAGAGGAGGATTTCATTTGAAAGTCTCTAGTTCGCCGGAGTCAGAA
AATCTACAACTTTTCGTTCTTAAGTTCATCGGAGTCACAAAACCGACCAAATCCGATCGACCGGTCCTTAAAGACGAAGTTTTTAAAGCATTTTACATTGTCAAGGAAGA
TGGCGAGAACCAGCCTATCAGTTATTTTGGACAATATCCCCTCACAGCTACAGACTCTAATGAACTGGTCGGTGAAGGACGCTTTTTCCACACAATTGATGTTTCAAAGA
TGTCTTCCAATTTTGAGATTTGTGTGGACGACATGTTCTCTTCCAAGATTGTGTTACAGAATGCGATTCGATCAATTGCCATCAGAGACAACTTCCAATTCAAAACCGTG
AAATCTAACCGTGATTTTTTGGTCGTGCAATGTGTTGTCGAGGATTGTGAGTGGTTCCTTAGAGCATCTCGGTTCGGAGATGACGGTAGTGCCACTTGGGTTGTCAAGAG
ATTTGACAATGATCATACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCCATCGAGTTTCGATCCTATACGATAGCGTTTGGGCATTGATTCCGTCACAGACCTTATTAGACTTGATGCTCGAAAGAAAATTTCACAGATCTACTAATGG
TGAAGACAAGTTTCAGATTATAAGCTTTTCTGAGAACAAAGATCTTGTCTGGATGTTCGCTGGGGTATATAACAGGATGTACCATAATTGTTTCCTTGTCGTATATGTTG
AAAGTGTGGATACTAGTATCCATAGGGACGATGCAAACCTGAATTCAACAGAAAATACAAACAACAGAGGAGGATTTCATTTGAAAGTCTCTAGTTCGCCGGAGTCAGAA
AATCTACAACTTTTCGTTCTTAAGTTCATCGGAGTCACAAAACCGACCAAATCCGATCGACCGGTCCTTAAAGACGAAGTTTTTAAAGCATTTTACATTGTCAAGGAAGA
TGGCGAGAACCAGCCTATCAGTTATTTTGGACAATATCCCCTCACAGCTACAGACTCTAATGAACTGGTCGGTGAAGGACGCTTTTTCCACACAATTGATGTTTCAAAGA
TGTCTTCCAATTTTGAGATTTGTGTGGACGACATGTTCTCTTCCAAGATTGTGTTACAGAATGCGATTCGATCAATTGCCATCAGAGACAACTTCCAATTCAAAACCGTG
AAATCTAACCGTGATTTTTTGGTCGTGCAATGTGTTGTCGAGGATTGTGAGTGGTTCCTTAGAGCATCTCGGTTCGGAGATGACGGTAGTGCCACTTGGGTTGTCAAGAG
ATTTGACAATGATCATACATAA
Protein sequenceShow/hide protein sequence
MASHRVSILYDSVWALIPSQTLLDLMLERKFHRSTNGEDKFQIISFSENKDLVWMFAGVYNRMYHNCFLVVYVESVDTSIHRDDANLNSTENTNNRGGFHLKVSSSPESE
NLQLFVLKFIGVTKPTKSDRPVLKDEVFKAFYIVKEDGENQPISYFGQYPLTATDSNELVGEGRFFHTIDVSKMSSNFEICVDDMFSSKIVLQNAIRSIAIRDNFQFKTV
KSNRDFLVVQCVVEDCEWFLRASRFGDDGSATWVVKRFDNDHT