CuGenDBv2

Gene ID	Spg025510
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA-directed RNA polymerase
Genome location	scaffold13:29095578..29120266
RNA-Seq Expression	Spg025510
Synteny	Spg025510
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domains	IPR036249 - Thioredoxin-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598213.1 Type 2 DNA topoisomerase 6 subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-67

85.03

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LDRML HLRATCKYYTG+PKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSPQQ            AS+QGKI+DPN+TKYSVKVLP
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

XP_022132238.1 uncharacterized protein LOC111005143 [Momordica charantia]

3.6e-68

85.71

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MG+PT  DRM+SHLRATCKYYTGYPKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSPQQ            ASNQGKIADP++TKYSVKVLP
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

XP_022962537.1 uncharacterized protein LOC111462937 [Cucurbita moschata]

7.6e-66

83.67

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDP  LDRML HLRATCKYYTG+PKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSP+Q            AS+QGKI+DPN+TKYSVKVLP
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

XP_022996547.1 uncharacterized protein LOC111491762 [Cucurbita maxima]

4.0e-67

85.03

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LDRML HLRATCKYYTG+PKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSPQQ            AS+QGKI+DPN+TKYSVKVLP
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

XP_038885436.1 uncharacterized protein LOC120075825 isoform X1 [Benincasa hispida]

1.8e-67

85.03

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LDR+LSHLRATCKYYTG+PKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYPN+KFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSPQQ            ASNQGK++D NVTKYSVKVLP
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BIH6 uncharacterized protein LOC103489940

1.2e-64

82.31

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LD +L HLR+TCKYYTG+PKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFTIR NY+KHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSP+Q            AS+QGKIAD NVTKYSVKV+P
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

A0A5A7U4H2 Uncharacterized protein

1.2e-64

82.31

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LD +L HLR+TCKYYTG+PKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFTIR NY+KHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSP+Q            AS+QGKIAD NVTKYSVKV+P
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

A0A6J1BSI0 uncharacterized protein LOC111005143

1.8e-68

85.71

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MG+PT  DRM+SHLRATCKYYTGYPKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSPQQ            ASNQGKIADP++TKYSVKVLP
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

A0A6J1HCY2 uncharacterized protein LOC111462937

3.7e-66

83.67

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDP  LDRML HLRATCKYYTG+PKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSP+Q            AS+QGKI+DPN+TKYSVKVLP
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

A0A6J1K286 uncharacterized protein LOC111491762

1.9e-67

85.03

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LDRML HLRATCKYYTG+PKDLGPSRV+HFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIEMFHSPQQ            AS+QGKI+DPN+TKYSVKVLP
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G57230.1 Thioredoxin superfamily protein

5.8e-64

74.15

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Query:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGD T LDRML  LR+TCKYY+GYPKDLGPSRV+HFTSEREFVQLLH+GYPVVVAFTIR NYT+HLD++LEEAA EFYPN+KFMRVECPKYPGFCI+RQ+
Subjt:  MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP
         EYPFIE+FHSPQ  G            N+GK+ DPN+T+YSVKV+P
Subjt:  TEYPFIEMFHSPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLP

Sequences

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CDS sequence

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ATGGGAGACCCAACAACTTTGGATAGAATGCTTAGTCATCTTCGTGCCACATGCAAGTATTATACTGGTTACCCAAAAGATCTTGGACCTTCAAGGGTCGTACATTTTAC
ATCTGAACGTGAGTTTGTCCAGCTCCTTCATGAAGGTTATCCAGTCGTTGTTGCTTTTACAATCAGAGGTAACTACACAAAGCATCTTGATAAAGTATTGGAGGAAGCTG
CGGTTGAGTTTTATCCAAATGTGAAATTTATGCGTGTTGAGTGCCCAAAGTATCCTGGTTTCTGCATTTCACGGCAGAGAACGGAGTATCCATTTATCGAGATGTTTCAT
AGTCCACAACAAGTAGGAACTGCCAATCTAATTATGTTTTTGGTCTTGGCATCTAACCAGGGAAAGATTGCTGATCCTAACGTTACGAAGTACTCAGTGAAGGTTCTACC
AAATGGTACATTTGGAGAGGTAAAAAGCTCCAACTCATTAGAAAGAGCACAGATCGATGAAGGAAAACAACCCATTGAAGTCGAGTCAAGAGAGAAAGTACATACTGGGG
CAAGTAGCAAAGCAGGAGATACGCACGCTCAGTTTCTAACCCTATCCCAAGACGATATAGTAAAGGCTTATCGCTGTTCAACTATGACACCAGTGCCTACGGATTCAGAG
AATTTTTTAAGCGTCATGGGATACATGGTCGTTGAATCCAAGGAATACGTGGGTGTGCTATGTTTTTATAGTATTATGCAATCCGAAATCATGAATCAATCATTTGACTT
TGAGACTGCATTAGAGTAA

mRNA sequence

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Protein sequence

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MGDPTTLDRMLSHLRATCKYYTGYPKDLGPSRVVHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQRTEYPFIEMFH
SPQQVGTANLIMFLVLASNQGKIADPNVTKYSVKVLPNGTFGEVKSSNSLERAQIDEGKQPIEVESREKVHTGASSKAGDTHAQFLTLSQDDIVKAYRCSTMTPVPTDSE
NFLSVMGYMVVESKEYVGVLCFYSIMQSEIMNQSFDFETALE

Spg025510 (gene) of Sponge gourd (cylindrica) v1 genome