; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025518 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025518
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:29617142..29617900
RNA-Seq ExpressionSpg025518
SyntenySpg025518
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0838.24Show/hide
Query:  LKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEG-----LIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLID
        L S ASW+E+ G+GG  WV+HD  GS +C+  K++ + W +KMLE KAM+EG     LI+   +   R I        LE+  IL     DL ++ +++D
Subjt:  LKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEG-----LIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLID

Query:  QI
        +I
Subjt:  QI

KNA03763.1 hypothetical protein SOVF_206000, partial [Spinacia oleracea]2.0e-0726.29Show/hide
Query:  NGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPA-----PNCW-HLKSDASWNEKLGRGGGGW
        N E++   AVI+  IW  +N V +                 ++  + +  K + +  IG Q +Q+ ++  A     P  W  + +DA+    LG  G G 
Subjt:  NGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPA-----PNCW-HLKSDASWNEKLGRGGGGW

Query:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT
        V+ D EGS   V   Q+  +W +++ EAKA++ GL Q+ + C  R+I +E   N+L II  L     D S +  ++ ++  ++   H V FSH  R  N 
Subjt:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT

Query:  DAHCVER-TAVDFPVNVGDLHGSSSSQEKGQVFWAPNLPSWLFPLFKEDRC
         AH +   T V++ V +                WA ++P+ +  +   D C
Subjt:  DAHCVER-TAVDFPVNVGDLHGSSSSQEKGQVFWAPNLPSWLFPLFKEDRC

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.9e-0829.5Show/hide
Query:  KNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCKRRSIAIEAQTNALEIINILTRKLEDLSKV
        K P  N W L ++A+W      GG GW++ D +G ++    + I     I  LE  A+ EGL  I  + C+     I  ++++LE I++L R+ +D +++
Subjt:  KNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCKRRSIAIEAQTNALEIINILTRKLEDLSKV

Query:  KSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
          L+++I  +  D+  V   H +R  N  AH + R A++
Subjt:  KSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.4e-1326.02Show/hide
Query:  MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPAP-NCWHLKSDASWNEKLGRGGGGW
        M D  + E+L    +    IWN++N V    +        Q +   +   E SY        +    +   +  P P + W L +DASW++   RGG GW
Subjt:  MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPAP-NCWHLKSDASWNEKLGRGGGGW

Query:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT
        ++   +G +V  G + +     +K+LEA A+LEGL  + +    R + IE  T++ E+ ++L RK EDL+K   ++++I  +      + F+   R  N 
Subjt:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT

Query:  DAHCVERTAVDFPVNVGDLHGSSSSQEKGQVFWAPNLPSWLFPLFK
         AH + + A               S  +  + W    P+WL  L K
Subjt:  DAHCVERTAVDFPVNVGDLHGSSSSQEKGQVFWAPNLPSWLFPLFK

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]9.1e-0829.87Show/hide
Query:  RIGSQASQAPRKNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCK----RRSIAIEAQTNALE
        RIG     A  K P  N W L +DA+W      GG GW++ D +G ++    + I     I  LE  A+ EGL  I  + C+         I  ++++LE
Subjt:  RIGSQASQAPRKNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCK----RRSIAIEAQTNALE

Query:  IINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
         I++L R+ +D +++  L+++I  +  D+  V   H +R  N  AH + R A++
Subjt:  IINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD

TrEMBL top hitse value%identityAlignment
A0A0K9QAP7 RNase H domain-containing protein (Fragment)9.8e-0826.29Show/hide
Query:  NGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPA-----PNCW-HLKSDASWNEKLGRGGGGW
        N E++   AVI+  IW  +N V +                 ++  + +  K + +  IG Q +Q+ ++  A     P  W  + +DA+    LG  G G 
Subjt:  NGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPA-----PNCW-HLKSDASWNEKLGRGGGGW

Query:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT
        V+ D EGS   V   Q+  +W +++ EAKA++ GL Q+ + C  R+I +E   N+L II  L     D S +  ++ ++  ++   H V FSH  R  N 
Subjt:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT

Query:  DAHCVER-TAVDFPVNVGDLHGSSSSQEKGQVFWAPNLPSWLFPLFKEDRC
         AH +   T V++ V +                WA ++P+ +  +   D C
Subjt:  DAHCVER-TAVDFPVNVGDLHGSSSSQEKGQVFWAPNLPSWLFPLFKEDRC

A0A6J1CP26 uncharacterized protein LOC1110134123.4e-0829.5Show/hide
Query:  KNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCKRRSIAIEAQTNALEIINILTRKLEDLSKV
        K P  N W L ++A+W      GG GW++ D +G ++    + I     I  LE  A+ EGL  I  + C+     I  ++++LE I++L R+ +D +++
Subjt:  KNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCKRRSIAIEAQTNALEIINILTRKLEDLSKV

Query:  KSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
          L+++I  +  D+  V   H +R  N  AH + R A++
Subjt:  KSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD

A0A6J1CQG0 uncharacterized protein LOC1110132161.8e-0626.55Show/hide
Query:  LNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPR------------KNPAPNCWHLKSDASWNEKL
        L+ EE+A   VI  +IW  +N      +    +   +SI   I            + R        PR              P  NCW L +DASW+E+ 
Subjt:  LNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPR------------KNPAPNCWHLKSDASWNEKL

Query:  GRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLS
          GG GW++ D  G +V  G  +I +   I  LE   ++ GL Q ++   R  I +E  ++++E+I ++ ++  DL+
Subjt:  GRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLS

A0A6J1DNV9 uncharacterized protein LOC1110224037.0e-1426.02Show/hide
Query:  MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPAP-NCWHLKSDASWNEKLGRGGGGW
        M D  + E+L    +    IWN++N V    +        Q +   +   E SY        +    +   +  P P + W L +DASW++   RGG GW
Subjt:  MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPAP-NCWHLKSDASWNEKLGRGGGGW

Query:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT
        ++   +G +V  G + +     +K+LEA A+LEGL  + +    R + IE  T++ E+ ++L RK EDL+K   ++++I  +      + F+   R  N 
Subjt:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT

Query:  DAHCVERTAVDFPVNVGDLHGSSSSQEKGQVFWAPNLPSWLFPLFK
         AH + + A               S  +  + W    P+WL  L K
Subjt:  DAHCVERTAVDFPVNVGDLHGSSSSQEKGQVFWAPNLPSWLFPLFK

A0A6J1DSV1 uncharacterized protein LOC1110236084.4e-0829.87Show/hide
Query:  RIGSQASQAPRKNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCK----RRSIAIEAQTNALE
        RIG     A  K P  N W L +DA+W      GG GW++ D +G ++    + I     I  LE  A+ EGL  I  + C+         I  ++++LE
Subjt:  RIGSQASQAPRKNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCK----RRSIAIEAQTNALE

Query:  IINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
         I++L R+ +D +++  L+++I  +  D+  V   H +R  N  AH + R A++
Subjt:  IINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.5e-0520.11Show/hide
Query:  IMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPAPNCW-HLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMK
        ++ ++W  +N +    + F A+   +  +  ++E  +         +     S   R  P P+ W    +DA+WN    R G GWV+ + +G +  +G +
Subjt:  IMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPAPNCW-HLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMK

Query:  QITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNAL-EIIN------ILTRKLEDLSKVKSLIDQISFI
         + K   +   E +AM   ++ +    +   +  E+ +  L EI+N       L   ++DL ++ S   ++ F+
Subjt:  QITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNAL-EIIN------ILTRKLEDLSKVKSLIDQISFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGACAACTTGAATGGTGAGGAACTTGCTAAAGGAGCAGTCATAATGCGGAAAATTTGGAACTACCAAAACGGTGTAGCAATCAACAACCAGAGATTTGGAGCAGA
AGCCTTCTACCAAAGCATCGATTTCAGTATTAAGGAGTTGGAAGTTTCTTACCTCAAGACCCAACCCTCCGACAGAATTGGGAGCCAAGCGAGTCAAGCTCCAAGAAAGA
ACCCGGCCCCAAATTGCTGGCATTTAAAGTCCGACGCGTCCTGGAATGAGAAGCTCGGCAGAGGAGGAGGGGGATGGGTGGTGCATGACTTGGAGGGATCCCTTGTCTGC
GTCGGAATGAAGCAAATTACAAAGAATTGGCCAATCAAGATGTTGGAAGCAAAAGCCATGTTAGAGGGGTTAATCCAAATTGTTGATACCTGCAAGCGTCGCTCCATCGC
CATTGAAGCGCAGACGAATGCCCTGGAGATTATTAACATCCTCACCAGAAAACTGGAGGATTTATCAAAGGTGAAATCTCTCATCGACCAGATCAGTTTCATTGCCTTGG
ATGTGCACGATGTGGGTTTTAGTCATTATAATAGGGTTTTGAACACAGACGCGCACTGTGTTGAGAGAACAGCCGTGGATTTCCCAGTCAATGTTGGCGATCTCCATGGA
AGCAGTTCTTCGCAGGAGAAGGGGCAAGTTTTTTGGGCTCCAAATTTGCCATCTTGGTTATTTCCCCTCTTTAAGGAGGATAGGTGTAATGACAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGACAACTTGAATGGTGAGGAACTTGCTAAAGGAGCAGTCATAATGCGGAAAATTTGGAACTACCAAAACGGTGTAGCAATCAACAACCAGAGATTTGGAGCAGA
AGCCTTCTACCAAAGCATCGATTTCAGTATTAAGGAGTTGGAAGTTTCTTACCTCAAGACCCAACCCTCCGACAGAATTGGGAGCCAAGCGAGTCAAGCTCCAAGAAAGA
ACCCGGCCCCAAATTGCTGGCATTTAAAGTCCGACGCGTCCTGGAATGAGAAGCTCGGCAGAGGAGGAGGGGGATGGGTGGTGCATGACTTGGAGGGATCCCTTGTCTGC
GTCGGAATGAAGCAAATTACAAAGAATTGGCCAATCAAGATGTTGGAAGCAAAAGCCATGTTAGAGGGGTTAATCCAAATTGTTGATACCTGCAAGCGTCGCTCCATCGC
CATTGAAGCGCAGACGAATGCCCTGGAGATTATTAACATCCTCACCAGAAAACTGGAGGATTTATCAAAGGTGAAATCTCTCATCGACCAGATCAGTTTCATTGCCTTGG
ATGTGCACGATGTGGGTTTTAGTCATTATAATAGGGTTTTGAACACAGACGCGCACTGTGTTGAGAGAACAGCCGTGGATTTCCCAGTCAATGTTGGCGATCTCCATGGA
AGCAGTTCTTCGCAGGAGAAGGGGCAAGTTTTTTGGGCTCCAAATTTGCCATCTTGGTTATTTCCCCTCTTTAAGGAGGATAGGTGTAATGACAGTTAA
Protein sequenceShow/hide protein sequence
MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPAPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVC
VGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVDFPVNVGDLHG
SSSSQEKGQVFWAPNLPSWLFPLFKEDRCNDS