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Spg025523 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025523
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold13:28214459..28218308
RNA-Seq ExpressionSpg025523
SyntenySpg025523
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]5.9e-1072.73Show/hide
Query:  VRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLP
        +RD PLIC GESG   DSI L F GQDR+GSWEHN+TRWN LLP
Subjt:  VRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLP
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-0571.88Show/hide
Query:  ISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSR
        + L  WGQD+VGSWEHNH RWNSL+PD R SR
Subjt:  ISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.3e-0973.33Show/hide
Query:  DYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSR
        D PLI   ESG  ADS+ L FWGQDRV SWEHNHTRWNSLLP  R
Subjt:  DYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSR
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-1272.34Show/hide
Query:  VRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSR
        +RD PL C GESG   DSI L FWGQDRVGSWEHNHTRWNS +P  R
Subjt:  VRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSR
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]2.6e-0571.88Show/hide
Query:  ISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSR
        + L  WGQD+VGSWEHNH RWNSL+PD R SR
Subjt:  ISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein1.2e-0571.88Show/hide
Query:  ISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSR
        + L  WGQD+VGSWEHNH RWNSL+PD R SR
Subjt:  ISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSR
A0A5A7SPG1 Pol protein2.9e-1072.73Show/hide
Query:  VRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLP
        +RD PLIC GESG   DSI L F GQDR+GSWEHN+TRWN LLP
Subjt:  VRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLP
A0A5A7U2P4 Integrase catalytic domain-containing protein6.4e-1073.33Show/hide
Query:  DYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSR
        D PLI   ESG  ADS+ L FWGQDRV SWEHNHTRWNSLLP  R
Subjt:  DYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSR
A0A5D3C3J6 Gag/pol protein2.3e-1272.34Show/hide
Query:  VRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSR
        +RD PL C GESG   DSI L FWGQDRVGSWEHNHTRWNS +P  R
Subjt:  VRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSR
A0A5D3E3M6 Uncharacterized protein1.2e-0571.88Show/hide
Query:  ISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSR
        + L  WGQD+VGSWEHNH RWNSL+PD R SR
Subjt:  ISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTATGGACTCTTGTCTGTGAGGGATTATCCTTTGATTTGTATGGGTGAGAGTGGCCTGTACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAG
CTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCTGACTCTAGGGTAAGTAGAGGTGTGTTCCCTTATGTGGTGACTCTGGGTCTTGAACAATGGGTCATGCCCT
CTCTATGGCTCGAGAGGGAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCAACGTTGGTCA
TTAGAGGAGCACGGGAACTTAAGGATAAAGACGTACCCTAGGGGTCCATTAGGTCCCACCGGTAGCTCACTAAGGGCGTTGAGGCCCCAGCGTGTTTGGGCATTATTCTG
TAAATCGTGTCTTGTAAGTCCGGGTCTAGAATTAGGTTGTTTGCTGATGAAGATCACGACTAAAACGAAGCCAAAAACGCGAAGAACGGTACGGATTCTACCCAGATTTT
GGCTCCAGACGCAGCAGTGTCGGGAAGCTATTCCTTGTGCGTCTCGACGCTGTCGCGATTTCACGCAGCGGACAGTTGAAATCGTGCCAGCGTCAGGACGTTGTTATTCA
AGCGTCTCGACGCTGTCGCGATGTCATGCGACAGTTAGCTTTTCGTGGAGACGTGATGGTGCAACCCTAATTTTTGGGTCCGATTCGCGTGGATTGGTTGAGCTGGGACC
GGTTTGGTCCGATTCAACCTAA
mRNA sequenceShow/hide mRNA sequence
GATTATGGACTCTTGTCTGTGAGGGATTATCCTTTGATTTGTATGGGTGAGAGTGGCCTGTACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAG
CTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCTGACTCTAGGGTAAGTAGAGGTGTGTTCCCTTATGTGGTGACTCTGGGTCTTGAACAATGGGTCATGCCCT
CTCTATGGCTCGAGAGGGAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCAACGTTGGTCA
TTAGAGGAGCACGGGAACTTAAGGATAAAGACGTACCCTAGGGGTCCATTAGGTCCCACCGGTAGCTCACTAAGGGCGTTGAGGCCCCAGCGTGTTTGGGCATTATTCTG
TAAATCGTGTCTTGTAAGTCCGGGTCTAGAATTAGGTTGTTTGCTGATGAAGATCACGACTAAAACGAAGCCAAAAACGCGAAGAACGGTACGGATTCTACCCAGATTTT
GGCTCCAGACGCAGCAGTGTCGGGAAGCTATTCCTTGTGCGTCTCGACGCTGTCGCGATTTCACGCAGCGGACAGTTGAAATCGTGCCAGCGTCAGGACGTTGTTATTCA
AGCGTCTCGACGCTGTCGCGATGTCATGCGACAGTTAGCTTTTCGTGGAGACGTGATGGTGCAACCCTAATTTTTGGGTCCGATTCGCGTGGATTGGTTGAGCTGGGACC
GGTTTGGTCCGATTCAACCTAA
Protein sequenceShow/hide protein sequence
DYGLLSVRDYPLICMGESGLYADSISLPFWGQDRVGSWEHNHTRWNSLLPDSRVSRGVFPYVVTLGLEQWVMPSLWLEREGVNSILCDYVPSSPLGLVPKMVGLLSQRWS
LEEHGNLRIKTYPRGPLGPTGSSLRALRPQRVWALFCKSCLVSPGLELGCLLMKITTKTKPKTRRTVRILPRFWLQTQQCREAIPCASRRCRDFTQRTVEIVPASGRCYS
SVSTLSRCHATVSFSWRRDGATLIFGSDSRGLVELGPVWSDST