; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025524 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025524
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold13:30727314..30728833
RNA-Seq ExpressionSpg025524
SyntenySpg025524
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS37364.1 hypothetical protein Acr_00g0051530 [Actinidia rufa]4.8e-1728.33Show/hide
Query:  PGNRSRGEEVDAKVTALEDKVRAVEAEARVAEAEAKRDNLPWKTELLNTLKELGSSQGDLQKSKDSGEQNLEELIDQVDPSFTDEVMKAEVSQKFKVPT-
        P  R R    ++  T    +   V AEA +   E K  +          +++L  ++ D   +  +    ++ L+ Q DP FT  V+ A +S KFK+PT 
Subjt:  PGNRSRGEEVDAKVTALEDKVRAVEAEARVAEAEAKRDNLPWKTELLNTLKELGSSQGDLQKSKDSGEQNLEELIDQVDPSFTDEVMKAEVSQKFKVPT-

Query:  FKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRCQ------------------------------------DRRGWSRPSRPDR---RDYTR------KFEK
           Y+GK DP+ HLD+Y + M     SD + C+                                    D R  +R  RPDR   R   R      +  +
Subjt:  FKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRCQ------------------------------------DRRGWSRPSRPDR---RDYTR------KFEK

Query:  YTLTSL--PQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGK-DDDRP
        +TL  L  P  ++L EI++      P K+K++  KR++ +YC FHRDHGH+T +C QLK++I  LI+  YL+K+        + + +  D+RP
Subjt:  YTLTSL--PQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGK-DDDRP

XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.7e-2046.02Show/hide
Query:  WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNG
        W +  R  ++D  +KFEKYT T++P E++LMEI+N  L   P ++ ++  KR KG+YCLFH DHGH+T++C  LK+E+E LI   YLK++  + KA +NG
Subjt:  WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNG

Query:  QGKDDDRPLLEIR
        +   D  P  EIR
Subjt:  QGKDDDRPLLEIR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.7e-2828.83Show/hide
Query:  NLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRC----------------QDRRG-----------------
        +LEEL+DQ D  FT+E+M+ +V  KFK+PT K +D   DPV HLDAYR WMD + VS+A+RC                Q +RG                 
Subjt:  NLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRC----------------QDRRG-----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYL
                     W +  R  ++D  RKFEKYT T++P E++LMEI++  L   P ++K++  KR KG+YCLFHRDHGH+T++C  LK+E+E LIR  YL
Subjt:  -------------WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYL

Query:  KKFTTKAKAVRNGQGKDDDRPLLEIR
        K++  + KA +NG+   D  P  EIR
Subjt:  KKFTTKAKAVRNGQGKDDDRPLLEIR

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]3.9e-1947.37Show/hide
Query:  WSRPSR-PDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRN
        W +  R   ++D  RKFEKYT T++P E++LMEI++  L   P  +K+  +KR KG+YCLFHRDHGH+T +C  LK+E+E LIR  YLK++    KA  N
Subjt:  WSRPSR-PDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRN

Query:  GQGKDDDRPLLEIR
         +  D+  P  EIR
Subjt:  GQGKDDDRPLLEIR

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]3.9e-1945.13Show/hide
Query:  WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNG
        W +  R  ++D  RKFEKYT T++P E++LMEI++  L   P ++K    KR KG+YCLFHRDH H+T++   LK+E+E LIR  YL+++  + KA +NG
Subjt:  WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNG

Query:  QGKDDDRPLLEIR
        +   +  P  EIR
Subjt:  QGKDDDRPLLEIR

TrEMBL top hitse value%identityAlignment
A0A2N9J520 Ribonuclease H3.2e-1925.17Show/hide
Query:  NRSRGEEVDAKVTALEDKVRAVEAEARVAEAEAKRDN---------LPWKTELLNTLKELGSSQGDLQKSKDSGEQNLEELIDQVDPSFTDEVMKAEVSQ
        N+ RG + +++    +++ +  + + +  E E + +N           W+ E+     ++G  + +    K    +N+++L+   D  FT++V+   +  
Subjt:  NRSRGEEVDAKVTALEDKVRAVEAEARVAEAEAKRDN---------LPWKTELLNTLKELGSSQGDLQKSKDSGEQNLEELIDQVDPSFTDEVMKAEVSQ

Query:  KFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRCQ--------DRRGW-----------------------SRPSRPDR-----------------
        KF++P+ + +DG KDP+ HL++++  M    V D I C+          R W                        RP+ P                   
Subjt:  KFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRCQ--------DRRGW-----------------------SRPSRPDR-----------------

Query:  -RDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQG
         R +  +F ++T  + P + I M+IRN      P KL ++ DKR + +YC FHRDHGH+T NC  LK +IE LI+   L++F  K    R   G
Subjt:  -RDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQG

A0A6J1CNT2 uncharacterized protein LOC1110128051.3e-2046.02Show/hide
Query:  WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNG
        W +  R  ++D  +KFEKYT T++P E++LMEI+N  L   P ++ ++  KR KG+YCLFH DHGH+T++C  LK+E+E LI   YLK++  + KA +NG
Subjt:  WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNG

Query:  QGKDDDRPLLEIR
        +   D  P  EIR
Subjt:  QGKDDDRPLLEIR

A0A6J1DWY0 uncharacterized protein LOC1110252931.3e-2828.83Show/hide
Query:  NLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRC----------------QDRRG-----------------
        +LEEL+DQ D  FT+E+M+ +V  KFK+PT K +D   DPV HLDAYR WMD + VS+A+RC                Q +RG                 
Subjt:  NLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRC----------------QDRRG-----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYL
                     W +  R  ++D  RKFEKYT T++P E++LMEI++  L   P ++K++  KR KG+YCLFHRDHGH+T++C  LK+E+E LIR  YL
Subjt:  -------------WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYL

Query:  KKFTTKAKAVRNGQGKDDDRPLLEIR
        K++  + KA +NG+   D  P  EIR
Subjt:  KKFTTKAKAVRNGQGKDDDRPLLEIR

A0A6J1DYL6 uncharacterized protein LOC1110257851.9e-1945.13Show/hide
Query:  WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNG
        W +  R  ++D  RKFEKYT T++P E++LMEI++  L   P ++K    KR KG+YCLFHRDH H+T++   LK+E+E LIR  YL+++  + KA +NG
Subjt:  WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNG

Query:  QGKDDDRPLLEIR
        +   +  P  EIR
Subjt:  QGKDDDRPLLEIR

A0A6J1DZ52 uncharacterized protein LOC1110256121.9e-1947.37Show/hide
Query:  WSRPSR-PDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRN
        W +  R   ++D  RKFEKYT T++P E++LMEI++  L   P  +K+  +KR KG+YCLFHRDHGH+T +C  LK+E+E LIR  YLK++    KA  N
Subjt:  WSRPSR-PDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRN

Query:  GQGKDDDRPLLEIR
         +  D+  P  EIR
Subjt:  GQGKDDDRPLLEIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGGAACCGAAGCCGAGGAGAAGAGGTTGACGCCAAAGTTACTGCCCTAGAGGATAAGGTTAGGGCAGTCGAGGCCGAGGCTAGAGTGGCCGAGGCCGAGGCCAA
GAGGGACAATCTCCCTTGGAAGACCGAGCTTCTAAACACCCTAAAGGAGCTCGGAAGTTCCCAAGGGGACCTGCAGAAATCAAAGGATTCTGGAGAACAAAACTTAGAAG
AACTAATCGACCAGGTTGACCCATCCTTCACTGATGAAGTCATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCTACATTTAAACCGTATGATGGCAAGAAGGACCCC
GTACAACACCTAGACGCCTACAGAAACTGGATGGACTTCCATGACGTTTCAGATGCAATCAGGTGTCAGGACAGACGAGGTTGGTCGCGTCCGAGCCGACCAGACCGAAG
AGACTACACAAGAAAGTTTGAAAAGTACACCCTTACCTCACTCCCACAGGAGAAAATCTTAATGGAAATTCGGAATACGAACCTCTTTAATGTACCAAGAAAGCTGAAGT
CAAATCTTGACAAAAGAGACAAAGGTCAGTATTGTCTCTTCCATCGAGATCATGGGCATTCAACTAGGAACTGCAATCAACTGAAGGACGAAATTGAAGCACTAATTCGG
AACAGGTACCTGAAGAAGTTCACCACTAAGGCCAAGGCGGTCAGAAATGGTCAAGGCAAAGATGATGATAGACCCCTTCTGGAAATCCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGGAACCGAAGCCGAGGAGAAGAGGTTGACGCCAAAGTTACTGCCCTAGAGGATAAGGTTAGGGCAGTCGAGGCCGAGGCTAGAGTGGCCGAGGCCGAGGCCAA
GAGGGACAATCTCCCTTGGAAGACCGAGCTTCTAAACACCCTAAAGGAGCTCGGAAGTTCCCAAGGGGACCTGCAGAAATCAAAGGATTCTGGAGAACAAAACTTAGAAG
AACTAATCGACCAGGTTGACCCATCCTTCACTGATGAAGTCATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCTACATTTAAACCGTATGATGGCAAGAAGGACCCC
GTACAACACCTAGACGCCTACAGAAACTGGATGGACTTCCATGACGTTTCAGATGCAATCAGGTGTCAGGACAGACGAGGTTGGTCGCGTCCGAGCCGACCAGACCGAAG
AGACTACACAAGAAAGTTTGAAAAGTACACCCTTACCTCACTCCCACAGGAGAAAATCTTAATGGAAATTCGGAATACGAACCTCTTTAATGTACCAAGAAAGCTGAAGT
CAAATCTTGACAAAAGAGACAAAGGTCAGTATTGTCTCTTCCATCGAGATCATGGGCATTCAACTAGGAACTGCAATCAACTGAAGGACGAAATTGAAGCACTAATTCGG
AACAGGTACCTGAAGAAGTTCACCACTAAGGCCAAGGCGGTCAGAAATGGTCAAGGCAAAGATGATGATAGACCCCTTCTGGAAATCCGTTGA
Protein sequenceShow/hide protein sequence
MPGNRSRGEEVDAKVTALEDKVRAVEAEARVAEAEAKRDNLPWKTELLNTLKELGSSQGDLQKSKDSGEQNLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDP
VQHLDAYRNWMDFHDVSDAIRCQDRRGWSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIR
NRYLKKFTTKAKAVRNGQGKDDDRPLLEIR