; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025554 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025554
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold13:29902585..29907960
RNA-Seq ExpressionSpg025554
SyntenySpg025554
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL69050.1 hypothetical protein [Colocasia esculenta]1.2e-1740.79Show/hide
Query:  AQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQFCL
        AQ+    EE L + +    ++S K    D D D+D  RKK R + D  RR +P   F  YT  ++  +QIL EI N   +R P +M++ P  RD++++C 
Subjt:  AQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQFCL

Query:  FHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPNDQVWGPQAKI
        FHRDHGH T  C QLKDEIE LI RG+L +FV  +  +  P  + W P+  I
Subjt:  FHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPNDQVWGPQAKI

XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.2e-1735.47Show/hide
Query:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNR---KKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRD
        ++RAQ++++A E   SK+E+  + +      DQ R++  ++    +W   D   ++  P  KF++YT  ++P EQ+LMEI N  LL+ P +M      R 
Subjt:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNR---KKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRD

Query:  KSQFCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVED-KSQKSAPNDQVWGPQAKIKRCHARPHPEAEG
        K ++CLFH DHGH T++C  LK+E+E LI RG+LKE+VE+ K+ ++  +D+   P  +I+     P     G
Subjt:  KSQFCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVED-KSQKSAPNDQVWGPQAKIKRCHARPHPEAEG

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.0e-1735.52Show/hide
Query:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ
        ++RAQ++++A E   SK+E      R     ++  DK     +W   D   ++  P  KF++YT  ++P EQ+LMEI +  LL+ P +MK     R K +
Subjt:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ

Query:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVED-KSQKSAPNDQVWGPQAKIKRCHARPHPEAEGASILAISIQSCRTT
        +CLFHRDHGH T++C  LK+E+E LI RG+LKE+VE+ K+ ++  +D+   P  +I+     P     G    A  ++  RT+
Subjt:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVED-KSQKSAPNDQVWGPQAKIKRCHARPHPEAEGASILAISIQSCRTT

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]1.4e-1841.22Show/hide
Query:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNR---KKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRD
        ++RAQK+++AEE    KKE   + +      DQ R++   +    KW   D    +     KF++YT  ++P EQ+LMEI +  LL+ P  MK  P  R 
Subjt:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNR---KKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRD

Query:  KSQFCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPN
        K ++CLFHRDHGH T +C  LK+E+E LI +G+LKE+V+D   K+ PN
Subjt:  KSQFCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPN

XP_030941654.1 uncharacterized protein LOC115966587 [Quercus lobata]2.0e-1738.36Show/hide
Query:  RAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHD--DDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ
        RA K++NAE+ L +++E   +  R+     +D  +D  RK  RT D  D+RR   P G+F  +T  + P +Q+LM+I +   L  PGK+K  P  R + +
Subjt:  RAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHD--DDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ

Query:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVE----DKSQKSAPNDQVWGPQAKI
        +C FHRDHGH T NC  LK +IE LI +G L++FV     DK ++  P  +   P+  I
Subjt:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVE----DKSQKSAPNDQVWGPQAKI

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128055.7e-1835.47Show/hide
Query:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNR---KKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRD
        ++RAQ++++A E   SK+E+  + +      DQ R++  ++    +W   D   ++  P  KF++YT  ++P EQ+LMEI N  LL+ P +M      R 
Subjt:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNR---KKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRD

Query:  KSQFCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVED-KSQKSAPNDQVWGPQAKIKRCHARPHPEAEG
        K ++CLFH DHGH T++C  LK+E+E LI RG+LKE+VE+ K+ ++  +D+   P  +I+     P     G
Subjt:  KSQFCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVED-KSQKSAPNDQVWGPQAKIKRCHARPHPEAEG

A0A6J1DWY0 uncharacterized protein LOC1110252939.8e-1835.52Show/hide
Query:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ
        ++RAQ++++A E   SK+E      R     ++  DK     +W   D   ++  P  KF++YT  ++P EQ+LMEI +  LL+ P +MK     R K +
Subjt:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ

Query:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVED-KSQKSAPNDQVWGPQAKIKRCHARPHPEAEGASILAISIQSCRTT
        +CLFHRDHGH T++C  LK+E+E LI RG+LKE+VE+ K+ ++  +D+   P  +I+     P     G    A  ++  RT+
Subjt:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVED-KSQKSAPNDQVWGPQAKIKRCHARPHPEAEGASILAISIQSCRTT

A0A6J1DZ52 uncharacterized protein LOC1110256126.8e-1941.22Show/hide
Query:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNR---KKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRD
        ++RAQK+++AEE    KKE   + +      DQ R++   +    KW   D    +     KF++YT  ++P EQ+LMEI +  LL+ P  MK  P  R 
Subjt:  MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNR---KKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRD

Query:  KSQFCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPN
        K ++CLFHRDHGH T +C  LK+E+E LI +G+LKE+V+D   K+ PN
Subjt:  KSQFCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPN

A0A7N2LNH8 Ribonuclease H2.2e-1737.8Show/hide
Query:  RAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHD-DDRRRAKPM-GKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ
        RA K++NAE+ L S+++   +  R+     +D  +D  RKK R  D  + RR KPM G+F  +T  + P +Q+LM+I +   L  PGK+K+ P  R + +
Subjt:  RAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHD-DDRRRAKPM-GKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ

Query:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPNDQVWGPQAKIKRCHARPHP
        +C FHRDHGH T +C  LK +IE LI +G L++FV        P +Q       ++R + RP P
Subjt:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPNDQVWGPQAKIKRCHARPHP

A0A7N2N9G0 Reverse transcriptase5.7e-1837.8Show/hide
Query:  RAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHD-DDRRRAKPM-GKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ
        RA K++NAE+ L +++E   +  R+     +D  +D  RKK RT D  + RR +PM G+F  +T  + P +Q+LM+I + + L  PGK+K+ P  R + +
Subjt:  RAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHD-DDRRRAKPM-GKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQ

Query:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPNDQVWGPQAKIKRCHARPHP
        +C FHRDHGH T +C  LK +IE LI +G L+ FV  +       DQ        +R + RP P
Subjt:  FCLFHRDHGHTTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPNDQVWGPQAKIKRCHARPHP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGAGCACAAAAATTCATAAATGCCGAAGAGCTGCTCAAGTCAAAAAAGGAAACAATGACACAAGAATCCAGAAAACATTCATTCTATGATCAAGACAGAGACAA
AGACCACAACCGCAAAAAATGGAGAACACATGACGATGATCGAAGGCGAGCAAAACCCATGGGTAAATTCAAGGAGTACACCCTCGCTTCAATTCCACAGGAACAAATAT
TGATGGAGATTACAAATACAGATCTTTTGAGACATCCTGGAAAAATGAAAACACGTCCAGAAGGAAGAGATAAAAGCCAGTTTTGTCTTTTCCACAGGGACCACGGACAC
ACAACTCGAAATTGCATCCAGCTTAAAGATGAGATTGAAACGTTGATTTGTCGTGGATTCCTCAAAGAGTTTGTTGAAGACAAGAGCCAGAAAAGCGCTCCGAATGACCA
AGTATGGGGCCCCCAAGCTAAAATAAAAAGATGTCATGCTCGGCCTCATCCCGAGGCCGAGGGAGCGTCTATTTTGGCTATTTCTATCCAATCTTGTAGGACGACAATAA
AGCTACACATAGGTCAGCACAAGGAAAAGATCATTACTCTTAAATCGGGCTTAAGGAGCTCGACCTATAGCAACCCATATGGTCGGCCTCGGCCCATTGGTCCTTGGTGC
CCTCGGTCACCTCGGTTTCGCTCAGTTCGGCCCCGAATTGTCTCCGAACGCCTCGAAACCCTAGAGCAGGAACATGGCACTAGAAACGAAAGTGGGCTCGAAGTCCTGGT
CGGCCTCGGCATCCTTCTCCTCGGCCTGAGTACTAGGCCGAGGCCAAGGAGGGTTGAGGTGGGCCAGGAAGGCCCTGACCCGTCTGTTGCTTGCTCTTGGGCTGATATCC
GCATTAAGGGACAAGCAGAACAGGACAAAACATGGGGGTTGTCGAGGCATTCAATGTCTCGACCTGGCATGGTATGCAGCAGGTACACTCGGCCTCGGCCATTGGCCGAG
GCCGAGCAGGCTAGTGAAGAGTCGGTGAGTTCTGAGTTTTATTCGGAGGGTGGTTCTAGTTTTTATGACGATTCTTCCTGCTCGGAGGAGGGTGGTGCTGAGGAGGCTAG
GGATGCTAAGGATGCTGAGCCTTCTGCATATTCAACGGTTATGTCATCTTCGGTGACCGAAGCTCAACTTGAGCGTCTCCGGTACGAGTATGACATTCCCGAGGATGTGC
ATATGAGGCAGATCCAAATGAGAGCTTCTCCCATCCTCCCGAGGGCGAAGTTGCTTTTTATATGGCAATTCCCTTGGAGAGTTCGCCGCTCCGCGGAGGCTCGTGAGTTC
GCTGAAGTTATTCAGCAAATTCCACTCTGTCACCACTTCGGTCCTAACTTAGTCAAACAAGAGAATCTCGTGTCCCTAAACCTCGCTCGTCCTCGTTCAACGATGCCTCC
ACGTTTGATCTACGCTGAGCATCGTAAGGCTAGAAAGACTCAAAGCGGAGCAGGAACCTCTCAAGCAAACGTGACTGATCTCACTGAGGAGGATTCTGACGCGCCATTCG
TTGTTGCTCGGTCCACCACTACCGACTTGAGGAGATCATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGAGCACAAAAATTCATAAATGCCGAAGAGCTGCTCAAGTCAAAAAAGGAAACAATGACACAAGAATCCAGAAAACATTCATTCTATGATCAAGACAGAGACAA
AGACCACAACCGCAAAAAATGGAGAACACATGACGATGATCGAAGGCGAGCAAAACCCATGGGTAAATTCAAGGAGTACACCCTCGCTTCAATTCCACAGGAACAAATAT
TGATGGAGATTACAAATACAGATCTTTTGAGACATCCTGGAAAAATGAAAACACGTCCAGAAGGAAGAGATAAAAGCCAGTTTTGTCTTTTCCACAGGGACCACGGACAC
ACAACTCGAAATTGCATCCAGCTTAAAGATGAGATTGAAACGTTGATTTGTCGTGGATTCCTCAAAGAGTTTGTTGAAGACAAGAGCCAGAAAAGCGCTCCGAATGACCA
AGTATGGGGCCCCCAAGCTAAAATAAAAAGATGTCATGCTCGGCCTCATCCCGAGGCCGAGGGAGCGTCTATTTTGGCTATTTCTATCCAATCTTGTAGGACGACAATAA
AGCTACACATAGGTCAGCACAAGGAAAAGATCATTACTCTTAAATCGGGCTTAAGGAGCTCGACCTATAGCAACCCATATGGTCGGCCTCGGCCCATTGGTCCTTGGTGC
CCTCGGTCACCTCGGTTTCGCTCAGTTCGGCCCCGAATTGTCTCCGAACGCCTCGAAACCCTAGAGCAGGAACATGGCACTAGAAACGAAAGTGGGCTCGAAGTCCTGGT
CGGCCTCGGCATCCTTCTCCTCGGCCTGAGTACTAGGCCGAGGCCAAGGAGGGTTGAGGTGGGCCAGGAAGGCCCTGACCCGTCTGTTGCTTGCTCTTGGGCTGATATCC
GCATTAAGGGACAAGCAGAACAGGACAAAACATGGGGGTTGTCGAGGCATTCAATGTCTCGACCTGGCATGGTATGCAGCAGGTACACTCGGCCTCGGCCATTGGCCGAG
GCCGAGCAGGCTAGTGAAGAGTCGGTGAGTTCTGAGTTTTATTCGGAGGGTGGTTCTAGTTTTTATGACGATTCTTCCTGCTCGGAGGAGGGTGGTGCTGAGGAGGCTAG
GGATGCTAAGGATGCTGAGCCTTCTGCATATTCAACGGTTATGTCATCTTCGGTGACCGAAGCTCAACTTGAGCGTCTCCGGTACGAGTATGACATTCCCGAGGATGTGC
ATATGAGGCAGATCCAAATGAGAGCTTCTCCCATCCTCCCGAGGGCGAAGTTGCTTTTTATATGGCAATTCCCTTGGAGAGTTCGCCGCTCCGCGGAGGCTCGTGAGTTC
GCTGAAGTTATTCAGCAAATTCCACTCTGTCACCACTTCGGTCCTAACTTAGTCAAACAAGAGAATCTCGTGTCCCTAAACCTCGCTCGTCCTCGTTCAACGATGCCTCC
ACGTTTGATCTACGCTGAGCATCGTAAGGCTAGAAAGACTCAAAGCGGAGCAGGAACCTCTCAAGCAAACGTGACTGATCTCACTGAGGAGGATTCTGACGCGCCATTCG
TTGTTGCTCGGTCCACCACTACCGACTTGAGGAGATCATCTTGA
Protein sequenceShow/hide protein sequence
MTRAQKFINAEELLKSKKETMTQESRKHSFYDQDRDKDHNRKKWRTHDDDRRRAKPMGKFKEYTLASIPQEQILMEITNTDLLRHPGKMKTRPEGRDKSQFCLFHRDHGH
TTRNCIQLKDEIETLICRGFLKEFVEDKSQKSAPNDQVWGPQAKIKRCHARPHPEAEGASILAISIQSCRTTIKLHIGQHKEKIITLKSGLRSSTYSNPYGRPRPIGPWC
PRSPRFRSVRPRIVSERLETLEQEHGTRNESGLEVLVGLGILLLGLSTRPRPRRVEVGQEGPDPSVACSWADIRIKGQAEQDKTWGLSRHSMSRPGMVCSRYTRPRPLAE
AEQASEESVSSEFYSEGGSSFYDDSSCSEEGGAEEARDAKDAEPSAYSTVMSSSVTEAQLERLRYEYDIPEDVHMRQIQMRASPILPRAKLLFIWQFPWRVRRSAEAREF
AEVIQQIPLCHHFGPNLVKQENLVSLNLARPRSTMPPRLIYAEHRKARKTQSGAGTSQANVTDLTEEDSDAPFVVARSTTTDLRRSS