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Spg025562 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025562
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontocopherol cyclase, chloroplastic
Genome locationscaffold13:32282967..32286454
RNA-Seq ExpressionSpg025562
SyntenySpg025562
Gene Ontology termsGO:0006631 - fatty acid metabolic process (biological process)
GO:0006979 - response to oxidative stress (biological process)
GO:0009266 - response to temperature stimulus (biological process)
GO:0009644 - response to high light intensity (biological process)
GO:0009915 - phloem sucrose loading (biological process)
GO:0010189 - vitamin E biosynthetic process (biological process)
GO:0015994 - chlorophyll metabolic process (biological process)
GO:0016122 - xanthophyll metabolic process (biological process)
GO:0031347 - regulation of defense response (biological process)
GO:0010287 - plastoglobule (cellular component)
GO:0009976 - tocopherol cyclase activity (molecular function)
InterPro domainsIPR025893 - Tocopherol cyclase
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065033.1 tocopherol cyclase [Cucumis melo var. makuwa]3.8e-2196.15Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGNSFATKGGFKPPNKEV PEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

KAG6585392.1 Tocopherol cyclase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2194.23Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGN FA+KGGFKPPNKEVHPEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

XP_008445022.1 PREDICTED: tocopherol cyclase, chloroplastic [Cucumis melo]3.8e-2196.15Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGNSFATKGGFKPPNKEV PEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

XP_011649737.1 tocopherol cyclase, chloroplastic [Cucumis sativus]3.8e-2196.15Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGNSFATKGGFKPPNKEV PEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

XP_023538605.1 tocopherol cyclase, chloroplastic [Cucurbita pepo subsp. pepo]3.8e-2194.23Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGN FA+KGGFKPPNKEVHPEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

TrEMBL top hitse value%identityAlignment
A0A0A0LLK5 Tocopherol cyclase1.9e-2196.15Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGNSFATKGGFKPPNKEV PEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

A0A1S3BBQ0 tocopherol cyclase, chloroplastic1.9e-2196.15Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGNSFATKGGFKPPNKEV PEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

A0A5A7VA31 Tocopherol cyclase1.9e-2196.15Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGNSFATKGGFKPPNKEV PEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

A0A6J1BUS2 tocopherol cyclase, chloroplastic isoform X12.7e-2092.31Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGNSFATKGGFKPPNKEV PEEF+ K+VEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

A0A6J1GIN5 tocopherol cyclase, chloroplastic1.9e-2194.23Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR
        RHELSLGN FA+KGGFKPPNKEVHPEEFN+KVVEGFQVTPLWHQGFIRDDGR
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGR

SwissProt top hitse value%identityAlignment
A7YSY2 Spermatogenesis-associated protein 5-like protein 18.9e-0536.51Show/hide
Query:  DDGRAEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALARLRSIMELWR
        ++ + E  + G SEA D+LREL+  PL + +    +GL  PRG+LL GPP + + + +  + R
Subjt:  DDGRAEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALARLRSIMELWR

Q6K7V6 Probable tocopherol cyclase, chloroplastic2.5e-1564.81Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRAE
        RHEL LGN+F    G  PP  EV P+EF+ +V+EGFQVTP+WHQGFIRDDGR++
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRAE

Q94FY7 Tocopherol cyclase, chloroplastic1.5e-1567.86Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRAEEA
        RHEL LGN+F+   G K PNKEV PEEFNR+V EGFQ TP WHQG I DDGR + A
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRAEEA

Q94FY8 Tocopherol cyclase, chloroplastic1.2e-1464.15Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRA
        RHEL LGN+F +     PP  EV P++F+R+V+EGFQVTP+WHQGFIRDDGR+
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRA

Q9ZPR1 Cell division control protein 48 homolog B2.9e-1149.28Show/hide
Query:  RAEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALARLRSIMELWRLDCLHSILL
        RAE  I GN  AL ALRELI+FP  +  EA+ +GL+WPRGLLLYGPP   +   +  + +    H I+L
Subjt:  RAEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALARLRSIMELWRLDCLHSILL

Arabidopsis top hitse value%identityAlignment
AT1G09100.1 26S proteasome AAA-ATPase subunit RPT5B4.5e-0436.96Show/hide
Query:  IAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALAR
        I G  + +  L E IV P+   ++ +++G+R P+G+LLYGPP   +
Subjt:  IAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALAR

AT1G45000.1 AAA-type ATPase family protein4.5e-0432.84Show/hide
Query:  QVTPLWHQGFIRDDGR-AEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALAR
        +V P+ +     D G  +  A+ G  + +  LRE I  PL   +   R+G++ P+G+LLYGPP   +
Subjt:  QVTPLWHQGFIRDDGR-AEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALAR

AT1G45000.2 AAA-type ATPase family protein4.5e-0432.84Show/hide
Query:  QVTPLWHQGFIRDDGR-AEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALAR
        +V P+ +     D G  +  A+ G  + +  LRE I  PL   +   R+G++ P+G+LLYGPP   +
Subjt:  QVTPLWHQGFIRDDGR-AEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALAR

AT2G03670.1 cell division cycle 48B2.0e-1249.28Show/hide
Query:  RAEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALARLRSIMELWRLDCLHSILL
        RAE  I GN  AL ALRELI+FP  +  EA+ +GL+WPRGLLLYGPP   +   +  + +    H I+L
Subjt:  RAEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLYGPPALARLRSIMELWRLDCLHSILL

AT4G32770.1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)1.0e-1667.86Show/hide
Query:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRAEEA
        RHEL LGN+F+   G K PNKEV PEEFNR+V EGFQ TP WHQG I DDGR + A
Subjt:  RHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRAEEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAGAGGGCATGCGGTGGCGGCGATGGCTGTGGTTGGTAGGCATGAACTGAGTCTGGGCAACAGTTTTGCAACTAAAGGAGGGTTTAAGCCTCCAAACAAGGA
AGTTCATCCGGAGGAGTTCAATAGAAAGGTAGTGGAAGGTTTTCAAGTCACTCCACTTTGGCATCAAGGATTTATTCGTGATGATGGCAGGGCTGAGGAAGCGATTGCTG
GGAACTCCGAGGCCCTTGATGCACTGAGAGAGTTGATTGTGTTCCCCCTACCATTCTGGCAGGAAGCTAAAAGAATTGGTCTAAGATGGCCTCGAGGCTTGCTTTTATAC
GGTCCCCCGGCACTGGCAAGGCTGAGATCCATCATGGAACTGTGGAGACTAGACTGTCTGCATTCCATCCTACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAGAGGGCATGCGGTGGCGGCGATGGCTGTGGTTGGTAGGCATGAACTGAGTCTGGGCAACAGTTTTGCAACTAAAGGAGGGTTTAAGCCTCCAAACAAGGA
AGTTCATCCGGAGGAGTTCAATAGAAAGGTAGTGGAAGGTTTTCAAGTCACTCCACTTTGGCATCAAGGATTTATTCGTGATGATGGCAGGGCTGAGGAAGCGATTGCTG
GGAACTCCGAGGCCCTTGATGCACTGAGAGAGTTGATTGTGTTCCCCCTACCATTCTGGCAGGAAGCTAAAAGAATTGGTCTAAGATGGCCTCGAGGCTTGCTTTTATAC
GGTCCCCCGGCACTGGCAAGGCTGAGATCCATCATGGAACTGTGGAGACTAGACTGTCTGCATTCCATCCTACTCTAG
Protein sequenceShow/hide protein sequence
MEKRGHAVAAMAVVGRHELSLGNSFATKGGFKPPNKEVHPEEFNRKVVEGFQVTPLWHQGFIRDDGRAEEAIAGNSEALDALRELIVFPLPFWQEAKRIGLRWPRGLLLY
GPPALARLRSIMELWRLDCLHSILL