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Spg025570 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025570
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:28004890..28016754
RNA-Seq ExpressionSpg025570
SyntenySpg025570
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-2656.72Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFN
        SL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLELY ES+  E  F +F  +G                                  S     
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFN

Query:  VSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        ++VGS GIVRGDDVCWLHAVFRAK AGGPGGGVT
Subjt:  VSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-2850.86Show/hide
Query:  GSEINLSTSGVLFGLSYTEGIKRLVGNLVFISSGYI------SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRP
        G+ +NL    VLFGL Y EG KR  GN   + +G +      SL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLEL  E +  E  ++F   
Subjt:  GSEINLSTSGVLFGLSYTEGIKRLVGNLVFISSGYI------SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRP

Query:  RGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
                                          S     FNVSVGST IVRGD+VCWLHAVF AK AGGPGGGV
Subjt:  RGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2653.59Show/hide
Query:  LVGNLVFISSGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVP
        L GN   + SG +       L TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLELY ES+  E   +F     SR  L                
Subjt:  LVGNLVFISSGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVP

Query:  DTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                         F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  DTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-2656.72Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFN
        SL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLELY ES+  E  F +F  +G                                  S     
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFN

Query:  VSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        ++VGS GIVRGDDVCWLHAVFRAK AGGPGGGVT
Subjt:  VSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.8e-2653.59Show/hide
Query:  LVGNLVFISSGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVP
        L GN   + SG +       L TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLELY ES+  E   +F     SR  L                
Subjt:  LVGNLVFISSGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVP

Query:  DTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                         F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  DTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase3.3e-2656.72Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFN
        SL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLELY ES+  E  F +F  +G                                  S     
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFN

Query:  VSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        ++VGS GIVRGDDVCWLHAVFRAK AGGPGGGVT
Subjt:  VSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.6e-2850.86Show/hide
Query:  GSEINLSTSGVLFGLSYTEGIKRLVGNLVFISSGYI------SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRP
        G+ +NL    VLFGL Y EG KR  GN   + +G +      SL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLEL  E +  E  ++F   
Subjt:  GSEINLSTSGVLFGLSYTEGIKRLVGNLVFISSGYI------SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRP

Query:  RGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
                                          S     FNVSVGST IVRGD+VCWLHAVF AK AGGPGGGV
Subjt:  RGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5A7V9N3 Reverse transcriptase8.7e-2753.59Show/hide
Query:  LVGNLVFISSGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVP
        L GN   + SG +       L TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLELY ES+  E   +F     SR  L                
Subjt:  LVGNLVFISSGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVP

Query:  DTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                         F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  DTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3D150 Reverse transcriptase3.3e-2656.72Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFN
        SL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLELY ES+  E  F +F  +G                                  S     
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFN

Query:  VSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        ++VGS GIVRGDDVCWLHAVFRAK AGGPGGGVT
Subjt:  VSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein8.7e-2753.59Show/hide
Query:  LVGNLVFISSGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVP
        L GN   + SG +       L TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SSTWLELY ES+  E   +F     SR  L                
Subjt:  LVGNLVFISSGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSSLQTGELDKTVEIELPVP

Query:  DTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                         F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  DTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAGAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTGTTTTATTCGGTTTGAGCTACACAGAAGGAATAAAGAGATTGGTTGGGAA
TCTCGTTTTCATTTCTTCAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGT
CTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCGAGT
CTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTCAACGT
TTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCTGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTAGACTAG
GGCAAGTGGGAGAAATACTCCCACAAGTCGTTCTTGGCCCGAAGAATAGTAGGGAAGACACTATCGGTTGTCCAGAGTTGATTGGAGAAGGAAAACGGTACAAGGAGTTC
CATCCATTTGAGCTACAAAAAGGAGCAAATTATGGACTTTTGGTGGAAAAATGCCCTAAAATGAGCTATCCAAGCCCAAATTTCCATACATGGGTCAAAGGGGGAGCCCA
AGAAGTCAACTATTCAAAGATGATCCAAAAACAAATGAAGAAAGACCCAAATCCGCGTCAGCCGGTTCTGGAATCCGCAAGCGTCGAGACGTTGTGGGGACAGCGTCGCG
ACGCTGCCCCATTTCTTGGCCAGCAAGTTGGATGA
mRNA sequenceShow/hide mRNA sequence
GGAGAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTGTTTTATTCGGTTTGAGCTACACAGAAGGAATAAAGAGATTGGTTGGGAA
TCTCGTTTTCATTTCTTCAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGT
CTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCGAGT
CTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTCAACGT
TTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCTGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTAGACTAG
GGCAAGTGGGAGAAATACTCCCACAAGTCGTTCTTGGCCCGAAGAATAGTAGGGAAGACACTATCGGTTGTCCAGAGTTGATTGGAGAAGGAAAACGGTACAAGGAGTTC
CATCCATTTGAGCTACAAAAAGGAGCAAATTATGGACTTTTGGTGGAAAAATGCCCTAAAATGAGCTATCCAAGCCCAAATTTCCATACATGGGTCAAAGGGGGAGCCCA
AGAAGTCAACTATTCAAAGATGATCCAAAAACAAATGAAGAAAGACCCAAATCCGCGTCAGCCGGTTCTGGAATCCGCAAGCGTCGAGACGTTGTGGGGACAGCGTCGCG
ACGCTGCCCCATTTCTTGGCCAGCAAGTTGGATGA
Protein sequenceShow/hide protein sequence
GEAHAKPAIAGSEINLSTSGVLFGLSYTEGIKRLVGNLVFISSGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSTWLELYIESIGWESRFHFFRPRGSRSS
LQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTVRLGQVGEILPQVVLGPKNSREDTIGCPELIGEGKRYKEF
HPFELQKGANYGLLVEKCPKMSYPSPNFHTWVKGGAQEVNYSKMIQKQMKKDPNPRQPVLESASVETLWGQRRDAAPFLGQQVG