; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025601 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025601
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationscaffold13:30848714..30849400
RNA-Seq ExpressionSpg025601
SyntenySpg025601
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFQ06099.1 probable small nuclear ribonucleoprotein g [Phtheirospermum japonicum]2.7e-1064.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGNEKT+IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
XP_014495384.2 probable small nuclear ribonucleoprotein G [Vigna radiata var. radiata]2.7e-1064.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGNEKT+IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
XP_021908398.1 probable small nuclear ribonucleoprotein G [Carica papaya]2.7e-1064.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGNEKT+IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
XP_022766094.1 probable small nuclear ribonucleoprotein G [Durio zibethinus]2.7e-1064.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGNEKT+IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
XP_040372701.1 probable small nuclear ribonucleoprotein G [Rosa chinensis]1.6e-1063.24Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNG+E+TNIGMVVIR+ ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
TrEMBL top hitse value%identityAlignment
A0A1U8LJV9 Small nuclear ribonucleoprotein G1.3e-1064.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGNEKT+IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
A0A2P5STX6 Small nuclear ribonucleoprotein G1.3e-1064.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGNEKT+IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
A0A2P6R7B2 Small nuclear ribonucleoprotein G7.8e-1163.24Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNG+E+TNIGMVVIR+ ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
A0A5D2BCD1 Small nuclear ribonucleoprotein G1.3e-1064.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGNEKT+IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
A0A5J5UFL8 Small nuclear ribonucleoprotein G1.3e-1064.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGNEKT+IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G6.1e-1364.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGN+KT+IGMVVIR  +IV
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
P24715 Probable small nuclear ribonucleoprotein G3.1e-0955.88Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MS SGQP  LKKYMDK+LQI L ANR                  NTVEVNGNEK +IGMVVIR  ++V
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
Arabidopsis top hitse value%identityAlignment
AT2G23930.1 probable small nuclear ribonucleoprotein G4.3e-1464.71Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNGN+KT+IGMVVIR  +IV
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
AT2G23930.2 probable small nuclear ribonucleoprotein G3.9e-0758.18Show/hide
Query:  MDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MDKKLQIKLNANR                  NTVEVNGN+KT+IGMVVIR  +IV
Subjt:  MDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
AT3G11500.1 Small nuclear ribonucleoprotein family protein1.7e-1363.24Show/hide
Query:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV
        MSRSGQP DLKKYMDKKLQIKLNANR                  NTVEVNG++KT+IGMVVIR  +IV
Subjt:  MSRSGQPLDLKKYMDKKLQIKLNANR------------------NTVEVNGNEKTNIGMVVIRLRAIV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGATCAGGCCAACCACTAGATCTCAAAAAATACATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCAACACTGTGGAAGTGAATGGCAATGAGAAAAC
TAATATTGGCATGGTGGTGATTAGATTAAGGGCAATAGTGTGGTCATTGTTTGTTGGGAATGACTTGATTTTGGCCTTTAGAAAAGATAAGAACTCCGATGGCGGCGTGA
AGTCCACAGCTGGAGAAGATGAGAACTCCGACAGCGGCGCGACATTCAACTGGAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGATCAGGCCAACCACTAGATCTCAAAAAATACATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCAACACTGTGGAAGTGAATGGCAATGAGAAAAC
TAATATTGGCATGGTGGTGATTAGATTAAGGGCAATAGTGTGGTCATTGTTTGTTGGGAATGACTTGATTTTGGCCTTTAGAAAAGATAAGAACTCCGATGGCGGCGTGA
AGTCCACAGCTGGAGAAGATGAGAACTCCGACAGCGGCGCGACATTCAACTGGAGAAGATGA
Protein sequenceShow/hide protein sequence
MSRSGQPLDLKKYMDKKLQIKLNANRNTVEVNGNEKTNIGMVVIRLRAIVWSLFVGNDLILAFRKDKNSDGGVKSTAGEDENSDSGATFNWRR