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Spg025622 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025622
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold13:31017800..31020006
RNA-Seq ExpressionSpg025622
SyntenySpg025622
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-1769.7Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++ITACCLLHNLI REM  + ++ E H GE DS+ M+ ENINFVE T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

KAA0049607.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1668.18Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++IT CCLLHNLI REMG + ++ E H  E DS+ M+ ENINFVE T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1771.21Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++ITACCLLHNLI REMG + ++ E H GE DS+ M+ ENINFVE T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-1565.15Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++IT CCLLH LI RE+G   ++ E H GE DS+ M+ ENINF+E T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-1769.7Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++ITACCLLHNLI REM  + ++ E H GE DS+ M+ ENINFVE T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

TrEMBL top hitse value%identityAlignment
A0A5A7U3R2 Retrotransposon protein2.6e-1769.7Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++ITACCLLHNLI REM  + ++ E H GE DS+ M+ ENINFVE T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

A0A5A7U5I3 Retrotransposon protein7.5e-1768.18Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++IT CCLLHNLI REMG + ++ E H  E DS+ M+ ENINFVE T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

A0A5A7VG45 Retrotransposon protein5.2e-1871.21Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++ITACCLLHNLI REMG + ++ E H GE DS+ M+ ENINFVE T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

A0A5D3C542 Retrotransposon protein1.4e-1565.15Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++IT CCLLH LI RE+G   ++ E H GE DS+ M+ ENINF+E T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

A0A5D3C7X6 Retrotransposon protein2.6e-1769.7Show/hide
Query:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN
        ++ITACCLLHNLI REM  + ++ E H GE DS+ M+ ENINFVE T  WTEWRDNLANQMFEDWN
Subjt:  RMITACCLLHNLIIREMGPDPSY-EGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTTTCTGCTCCATCTTTTCATCGTTTCCTTCTCCCTTCACCATTCCTCTCCTTGCCGAAGAAGCCCTAACCCTAGCTCTTCGTCTTCCGCTCTCTCTTCCTCCCT
TCTCTCCATTAGTATGTCGCCAGAAAATGAGCTATGTAACAGATCGAACATTGGATCGATTGGAACGAGGAACGAGGAACGAGCGGGATTTGTTGACTCGGGTCTGTGTT
CTCTCCGCCCTGTCTCATTTTCTTGTTTTTCTGTCCATTCTGAGATGGGATTTTTGTCCGTCTCTGATTGCATTGGAGTGGGGAGGGGGATTGTGAAGCATGTAGTGGAC
GTGATTCCATCTTGCCGCTCCATAAACTCGACCCTCTCTCTTGCTGCCTCCAAATTTCCATCAATTTTCTTGTATCGTGGCTTCCTCCCATTCAAAAAAAGTGTTCTCTG
TTCTGATTGTGAGGTAGCGTCTGAGGCCTGGTATGAGGGAGATGAGGTTTACCTTCTAACTAATGCCTTTGCTTTGTGTTCCTTTTCTTCTGTTTATCTCCAAAGTCTTT
ATGGTACGTGGTCTACTCTTGAATGTGCATTTCATATGTCCATGATCACGAATCCTAGAGGTCTTCTTTACTCATACTCTAGGCCAAGGCGGATGATAACGGCATGTTGC
CTCCTACATAATCTGATAATTCGAGAAATGGGACCCGACCCATCCTACGAGGGACATCCTGGAGAAGTTGATTCAAACGGTATGAGCGCCGAGAACATAAACTTTGTGGA
ACCCACTGGGGCATGGACTGAATGGAGAGACAATCTTGCAAATCAAATGTTCGAAGATTGGAACGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTTTCTGCTCCATCTTTTCATCGTTTCCTTCTCCCTTCACCATTCCTCTCCTTGCCGAAGAAGCCCTAACCCTAGCTCTTCGTCTTCCGCTCTCTCTTCCTCCCT
TCTCTCCATTAGTATGTCGCCAGAAAATGAGCTATGTAACAGATCGAACATTGGATCGATTGGAACGAGGAACGAGGAACGAGCGGGATTTGTTGACTCGGGTCTGTGTT
CTCTCCGCCCTGTCTCATTTTCTTGTTTTTCTGTCCATTCTGAGATGGGATTTTTGTCCGTCTCTGATTGCATTGGAGTGGGGAGGGGGATTGTGAAGCATGTAGTGGAC
GTGATTCCATCTTGCCGCTCCATAAACTCGACCCTCTCTCTTGCTGCCTCCAAATTTCCATCAATTTTCTTGTATCGTGGCTTCCTCCCATTCAAAAAAAGTGTTCTCTG
TTCTGATTGTGAGGTAGCGTCTGAGGCCTGGTATGAGGGAGATGAGGTTTACCTTCTAACTAATGCCTTTGCTTTGTGTTCCTTTTCTTCTGTTTATCTCCAAAGTCTTT
ATGGTACGTGGTCTACTCTTGAATGTGCATTTCATATGTCCATGATCACGAATCCTAGAGGTCTTCTTTACTCATACTCTAGGCCAAGGCGGATGATAACGGCATGTTGC
CTCCTACATAATCTGATAATTCGAGAAATGGGACCCGACCCATCCTACGAGGGACATCCTGGAGAAGTTGATTCAAACGGTATGAGCGCCGAGAACATAAACTTTGTGGA
ACCCACTGGGGCATGGACTGAATGGAGAGACAATCTTGCAAATCAAATGTTCGAAGATTGGAACGAGGAATGA
Protein sequenceShow/hide protein sequence
MRFLLHLFIVSFSLHHSSPCRRSPNPSSSSSALSSSLLSISMSPENELCNRSNIGSIGTRNEERAGFVDSGLCSLRPVSFSCFSVHSEMGFLSVSDCIGVGRGIVKHVVD
VIPSCRSINSTLSLAASKFPSIFLYRGFLPFKKSVLCSDCEVASEAWYEGDEVYLLTNAFALCSFSSVYLQSLYGTWSTLECAFHMSMITNPRGLLYSYSRPRRMITACC
LLHNLIIREMGPDPSYEGHPGEVDSNGMSAENINFVEPTGAWTEWRDNLANQMFEDWNEE