; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025640 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025640
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:27676783..27679917
RNA-Seq ExpressionSpg025640
SyntenySpg025640
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0642.86Show/hide
Query:  WMLWIIASVSNTR-WAVSHSVTRIR----PRGNRSSIQTRKLAKTG-------GPHYDKDD-GSVGRAPLHRRASKRWLYRACPT----QHRSVMLVDIE
        WM W+  S S  + W +   ++ +     PRGNR S+QT ++ KT            D D   S G+APL +R   RW  R  PT    +  S  LV+IE
Subjt:  WMLWIIASVSNTR-WAVSHSVTRIR----PRGNRSSIQTRKLAKTG-------GPHYDKDD-GSVGRAPLHRRASKRWLYRACPT----QHRSVMLVDIE

Query:  LPVPDTLPTSAESSRSSSS
        LPVPD LPTSAESSRS+SS
Subjt:  LPVPDTLPTSAESSRSSSS

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.6e-0679.41Show/hide
Query:  KDDGSVGRAPLHRRASKRWLYRACPTQHRSVMLV
        KDDGS GR PLHRR SKRWLY ACPTQ   VMLV
Subjt:  KDDGSVGRAPLHRRASKRWLYRACPTQHRSVMLV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.4e-1957.94Show/hide
Query:  PRGNRSSIQTRKLAKT--------------------GGPHYDKDDGSVGRAPLHRRASKRWLYRACPTQHRSVML----------VDIELPVPDTLPTSA
        PRGNRSS+QT +L KT                    GGPHYDKDDG+  RAPLHRR SKRWLY ACPT  RSVML          V+IEL VPDTLPTSA
Subjt:  PRGNRSSIQTRKLAKT--------------------GGPHYDKDDGSVGRAPLHRRASKRWLYRACPTQHRSVML----------VDIELPVPDTLPTSA

Query:  ESSRSSS
        ESS S+S
Subjt:  ESSRSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.4e-1957.94Show/hide
Query:  PRGNRSSIQTRKLAKT--------------------GGPHYDKDDGSVGRAPLHRRASKRWLYRACPTQHRSVML----------VDIELPVPDTLPTSA
        PRGNRSS+QT +L KT                    GGPHYDKDDG+  RAPLHRR SKRWLY ACPT  RSVML          V+IEL VPDTLPTSA
Subjt:  PRGNRSSIQTRKLAKT--------------------GGPHYDKDDGSVGRAPLHRRASKRWLYRACPTQHRSVML----------VDIELPVPDTLPTSA

Query:  ESSRSSS
        ESS S+S
Subjt:  ESSRSSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0642.86Show/hide
Query:  WMLWIIASVSNTR-WAVSHSVTRIR----PRGNRSSIQTRKLAKTG-------GPHYDKDD-GSVGRAPLHRRASKRWLYRACPT----QHRSVMLVDIE
        WM W+  S S  + W +   ++ +     PRGNR S+QT ++ KT            D D   S G+APL +R   RW  R  PT    +  S  LV+IE
Subjt:  WMLWIIASVSNTR-WAVSHSVTRIR----PRGNRSSIQTRKLAKTG-------GPHYDKDD-GSVGRAPLHRRASKRWLYRACPT----QHRSVMLVDIE

Query:  LPVPDTLPTSAESSRSSSS
        LPVPD LPTSAESSRS+SS
Subjt:  LPVPDTLPTSAESSRSSSS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.4e-0742.86Show/hide
Query:  WMLWIIASVSNTR-WAVSHSVTRIR----PRGNRSSIQTRKLAKTG-------GPHYDKDD-GSVGRAPLHRRASKRWLYRACPT----QHRSVMLVDIE
        WM W+  S S  + W +   ++ +     PRGNR S+QT ++ KT            D D   S G+APL +R   RW  R  PT    +  S  LV+IE
Subjt:  WMLWIIASVSNTR-WAVSHSVTRIR----PRGNRSSIQTRKLAKTG-------GPHYDKDD-GSVGRAPLHRRASKRWLYRACPT----QHRSVMLVDIE

Query:  LPVPDTLPTSAESSRSSSS
        LPVPD LPTSAESSRS+SS
Subjt:  LPVPDTLPTSAESSRSSSS

A0A5A7TCY8 DNA/RNA polymerases superfamily protein4.2e-0679.41Show/hide
Query:  KDDGSVGRAPLHRRASKRWLYRACPTQHRSVMLV
        KDDGS GR PLHRR SKRWLY ACPTQ   VMLV
Subjt:  KDDGSVGRAPLHRRASKRWLYRACPTQHRSVMLV

A0A5A7VGQ5 Uncharacterized protein6.6e-2057.94Show/hide
Query:  PRGNRSSIQTRKLAKT--------------------GGPHYDKDDGSVGRAPLHRRASKRWLYRACPTQHRSVML----------VDIELPVPDTLPTSA
        PRGNRSS+QT +L KT                    GGPHYDKDDG+  RAPLHRR SKRWLY ACPT  RSVML          V+IEL VPDTLPTSA
Subjt:  PRGNRSSIQTRKLAKT--------------------GGPHYDKDDGSVGRAPLHRRASKRWLYRACPTQHRSVML----------VDIELPVPDTLPTSA

Query:  ESSRSSS
        ESS S+S
Subjt:  ESSRSSS

A0A5D3BG85 Uncharacterized protein6.6e-2057.94Show/hide
Query:  PRGNRSSIQTRKLAKT--------------------GGPHYDKDDGSVGRAPLHRRASKRWLYRACPTQHRSVML----------VDIELPVPDTLPTSA
        PRGNRSS+QT +L KT                    GGPHYDKDDG+  RAPLHRR SKRWLY ACPT  RSVML          V+IEL VPDTLPTSA
Subjt:  PRGNRSSIQTRKLAKT--------------------GGPHYDKDDGSVGRAPLHRRASKRWLYRACPTQHRSVML----------VDIELPVPDTLPTSA

Query:  ESSRSSS
        ESS S+S
Subjt:  ESSRSSS

A0A5D3BTP3 Reverse transcriptase6.4e-0742.86Show/hide
Query:  WMLWIIASVSNTR-WAVSHSVTRIR----PRGNRSSIQTRKLAKTG-------GPHYDKDD-GSVGRAPLHRRASKRWLYRACPT----QHRSVMLVDIE
        WM W+  S S  + W +   ++ +     PRGNR S+QT ++ KT            D D   S G+APL +R   RW  R  PT    +  S  LV+IE
Subjt:  WMLWIIASVSNTR-WAVSHSVTRIR----PRGNRSSIQTRKLAKTG-------GPHYDKDD-GSVGRAPLHRRASKRWLYRACPT----QHRSVMLVDIE

Query:  LPVPDTLPTSAESSRSSSS
        LPVPD LPTSAESSRS+SS
Subjt:  LPVPDTLPTSAESSRSSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGTAATCTCGTTTTCATTTCTTCAAGATGGGAATTCCATAATTTCGTAAAGCGGAAGCGTGATTGGGACCG
ATTCGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGCCGAGAG
GAAATAGGTCGAGTATACAGACCAGGAAACTAGCTAAGACTGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAA
CGTTGGTTGTACAGGGCATGCCCTACACAACATAGATCAGTCATGTTAGTAGATATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGTAATCTCGTTTTCATTTCTTCAAGATGGGAATTCCATAATTTCGTAAAGCGGAAGCGTGATTGGGACCG
ATTCGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGCCGAGAG
GAAATAGGTCGAGTATACAGACCAGGAAACTAGCTAAGACTGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAA
CGTTGGTTGTACAGGGCATGCCCTACACAACATAGATCAGTCATGTTAGTAGATATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTATGTAG
Protein sequenceShow/hide protein sequence
MVSVFGAFLDKLVGNLVFISSRWEFHNFVKRKRDWDRFDTPTRMSPTWMLWIIASVSNTRWAVSHSVTRIRPRGNRSSIQTRKLAKTGGPHYDKDDGSVGRAPLHRRASK
RWLYRACPTQHRSVMLVDIELPVPDTLPTSAESSRSSSSM