CuGenDBv2

Gene ID	Spg025679
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold13:29850863..29855283
RNA-Seq Expression	Spg025679
Synteny	Spg025679
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

7.1e-32

64.8

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TSVFDRIKP TTR  VFQR+SMA  EEE+QC +ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M + + K F E N+D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

6.4e-33

66.4

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]

5.4e-32

64.8

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TS+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.1e-32

64.8

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+H+ +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.1e-32

64.8

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+H+ +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TQ06 Retrotransposon gag protein

3.1e-33

66.4

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7UI09 Retrotransposon gag protein

2.0e-32

64.8

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+H+ +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3BBF9 Gag protease polyprotein

2.6e-32

64.8

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TS+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3CCI8 Retrotransposon gag protein

2.0e-32

64.8

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVDNS + +Q TSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+H+ +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3D5Q0 Gag protease polyprotein

3.4e-32

63.2

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Query:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EE+DNS + +Q TS+FDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK + ST  FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK S+ INT+GSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTTGAGCCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCATTTCAAAGG
TTCAGAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAAACAAGAGTTCAGAGTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCAAGGGG
CATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAACAAAGAATGGCT
GAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAACTTT
CCACAAAAAGGAAGAGGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAGGGACCTCCGTCTTCGATCGCATCAAGC
CTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTA
GGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATTTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTT
CGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCTCCA
AGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACGTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTT
CCTTCACCACGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTACTTCCTTCTCCAAGTTCTCACGCATTTTGC
TGCAGTTCATTCTCTCAGAGTTCGAAGGTTCTCACGCTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACATTGCTGCGCTGCAGTTCCTTCTCTCAAGT
TTGAAGGTTCTCATGTGTTTTGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACGTCGATACAGT
TCCTTCTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTC
ACGCTACGCTACTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGTGTTGTTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTG
TTGCTTCCTTCACCAAGTTCGAAGGTTTTGACATTGCACTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTT
CTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAA

mRNA sequence

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Protein sequence

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MVEPKTDKAQAQVVRPESHQGPSSENSINRGVLHFKGSEILDSSEILHSHKNKSSEFQSSQAEPENSERLHQGACTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEQRMA
EMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESTFHKKEEGNFVTSYCIDVEEVDNSEKGEQGTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRL
GVSTSKKSQFSTFVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLSKVLMHCVAVPSPQVRRFSHTSIQFLLSKFEGSDAALL
PSPRSKVLTLHYFAVPSPSSKVLTLRYFLLQVLTHFAAVHSLRVRRFSRCFAVVPSLQVRRFSHCCAAVPSLKFEGSHVFCCSSFSPRFSCTALQFLLPKFEGFHTRRYS
SFSPSSKVLTLRCFLHHVRRFSRCTTSLFLLQVRRFSRYATSFSKFEGSHATLECVVVLLSSLSSKDPTLRCCVASFTKFEGFDIALLPSPRSKVLTLHCFVVPSPSSKV
LTLRCFLLQVRRSSCYARLRCCATF

Spg025679 (gene) of Sponge gourd (cylindrica) v1 genome