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Spg025682 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025682
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:31301535..31312657
RNA-Seq ExpressionSpg025682
SyntenySpg025682
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VDD05891.1 unnamed protein product, partial [Brassica oleracea]1.6e-0533.02Show/hide
Query:  PPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARN
        PP    LK N+D SW+   G  G+GW + DS  +L+ AG+K+I    S L +EA A+R         G      +  E DS  L K+L G++    + R 
Subjt:  PPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARN

Query:  ILEDVG
         ++++G
Subjt:  ILEDVG

VDD57911.1 unnamed protein product, partial [Brassica oleracea]7.0e-0635.96Show/hide
Query:  PNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGL----TNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKA
        P  A    SDA+W S+    G+GWT+ DS  + ++ GS  +    S L  EA+A++E L    +N L+H  C S       DS GLIKL+ G ++++   
Subjt:  PNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGL----TNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKA

Query:  RNILEDVGFLDTDF
        + IL D+G L   F
Subjt:  RNILEDVGFLDTDF

XP_013694596.1 uncharacterized protein LOC106398615 [Brassica napus]7.0e-0630.56Show/hide
Query:  PPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARN
        PPP+  LK N+D SW+  +G  G GW + D    ++ A +KK+ +  S L  EA A+R  +++ +  G      +I E DS  L+K++ G +    + + 
Subjt:  PPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARN

Query:  ILEDVGFL
        I++++  L
Subjt:  ILEDVGFL

XP_018435681.1 PREDICTED: uncharacterized protein LOC108807960 [Raphanus sativus]1.8e-0630.43Show/hide
Query:  AESSFVVPPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDT
        AE    +PPPN  LK N+D +W+      G+GW + D   +L+ AG+K++    S++  EA  +R  L   +  G      +  E DS  L+++L G++ 
Subjt:  AESSFVVPPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDT

Query:  NLFKARNILEDVGFL
           K + I++++G L
Subjt:  NLFKARNILEDVGFL

XP_022558126.1 uncharacterized protein LOC106378161 [Brassica napus]9.1e-0633.02Show/hide
Query:  VPPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKAR
        +PP    LK N+D SW    GV G+GW + D   +L+ AG+KK+    S L  EA A+R  +   +  G  R   + +E DS  L+ +L G++       
Subjt:  VPPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKAR

Query:  NILEDV
         I++D+
Subjt:  NILEDV

TrEMBL top hitse value%identityAlignment
A0A0D3DUM3 RNase H domain-containing protein2.0e-0635.65Show/hide
Query:  PNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGL----TNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKA
        P  A    SDA+W S+    G+GWT+ DS  + ++ GS  +    S L  EA+A++E L    +N L+H  C S       DS GLIKL+ G ++++   
Subjt:  PNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGL----TNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKA

Query:  RNILEDVGFLDTDFA
        + IL D+G L   F+
Subjt:  RNILEDVGFLDTDFA

A0A3P6C8F2 RNase H domain-containing protein (Fragment)7.5e-0633.02Show/hide
Query:  PPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARN
        PP    LK N+D SW+   G  G+GW + DS  +L+ AG+K+I    S L +EA A+R         G      +  E DS  L K+L G++    + R 
Subjt:  PPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARN

Query:  ILEDVG
         ++++G
Subjt:  ILEDVG

A0A3P6GDE0 RNase H domain-containing protein (Fragment)3.4e-0635.96Show/hide
Query:  PNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGL----TNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKA
        P  A    SDA+W S+    G+GWT+ DS  + ++ GS  +    S L  EA+A++E L    +N L+H  C S       DS GLIKL+ G ++++   
Subjt:  PNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGL----TNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKA

Query:  RNILEDVGFLDTDF
        + IL D+G L   F
Subjt:  RNILEDVGFLDTDF

A0A3P6GJ37 RNase H domain-containing protein (Fragment)3.7e-0533.91Show/hide
Query:  PNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGL----TNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKA
        P  A    SDA+W S+    G+GWT+ DS  + ++ G   +    S L  EA+A++E L    +N L+H  C S       DS GLIKL+ G ++++   
Subjt:  PNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGL----TNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKA

Query:  RNILEDVGFLDTDFA
        + IL ++G L   F+
Subjt:  RNILEDVGFLDTDFA

A0A6J0JKZ5 uncharacterized protein LOC1088079608.9e-0730.43Show/hide
Query:  AESSFVVPPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDT
        AE    +PPPN  LK N+D +W+      G+GW + D   +L+ AG+K++    S++  EA  +R  L   +  G      +  E DS  L+++L G++ 
Subjt:  AESSFVVPPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDT

Query:  NLFKARNILEDVGFL
           K + I++++G L
Subjt:  NLFKARNILEDVGFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.8e-0524.36Show/hide
Query:  PPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARNI
        PP Q +K N+DA+W+      G+GW + +    ++  G++ + +  ++L  E  A+R  +         R   +I E D+  L+ LL             
Subjt:  PPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARNI

Query:  LEDVGFLDTDFAPSSRPATDSAQNDFQSFHSSKWVKT-----YDIENLAREAISTS
                 DF P+ +PA +  Q     F   K+  T        + +ARE+IS S
Subjt:  LEDVGFLDTDFAPSSRPATDSAQNDFQSFHSSKWVKT-----YDIENLAREAISTS

AT4G29090.1 Ribonuclease H-like superfamily protein8.2e-0530.43Show/hide
Query:  PPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKD
        PPP+Q +K N+DA+W       G+GW + +    +   G++ + K  S+L  E  AMR  +   L+    +   +I E DS  LI++L   +
Subjt:  PPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAGCTCTTGAGATTCGAAGAAGGTTGGTCGAAGCACGAGGAAGCCAAGGCGATTATCGAGAAGTCTTGGGAAGGAAGAACAAAATCAAAGGCATCTTCAGTAA
TGAAGGCGCTGGGATGGAAGGAGACGAGGAGATTGGTCAATTTGGTGTTCTCGAGATCAAGAAGGGCATTTTGGCGGGCCAATTTAGTGTCAGCGTCGAGACTCTACCTC
ACAGCGTCCAGACGCTGCCTCGATATATAAATGCAGATTTTTGCGTTTTAGGGCATGCCAAGAGCAAAGAGGAATCCAATGGCCATTTGCTATGGGAGTCCGAAGAGTCA
GCAGAGTCAAGTTTCGTGGTCCCCCCTCCAAATCAAGCTCTGAAGTTGAACTCAGACGCCTCTTGGAGAAGCTTGGAAGGAGTTAGCGGGCTGGGGTGGACAGTTCATGA
CTCCTTTAGGTCTTTGATCATTGCTGGAAGTAAGAAAATAAAAAAGAACTGGTCGATTCTATCTTTGGAAGCCATGGCTATGAGAGAGGGTTTAACAAATTACCTCAATC
ACGGTGAATGTAGATCTCTCCCCCTCATCGTGGAGTTTGATTCGACAGGACTGATCAAGCTACTTCAGGGGAAGGACACCAATCTCTTTAAAGCAAGAAACATCTTGGAG
GATGTCGGGTTCCTAGACACAGATTTTGCTCCCTCAAGTCGCCCAGCAACAGATTCTGCACAAAATGATTTCCAAAGCTTCCATTCTTCCAAATGGGTTAAAACATACGA
CATCGAGAATTTGGCGAGAGAAGCGATTAGCACCTCCTTTTCATGGTGGCCGAGGTCATGCAATTGGGCAGCAAACTTCTTAGCTCAAAATGCAAGAAATTCCAATTCGA
CAGAACCTCATTCGAGAGGAATTTCATTGGACCAGGGTGATCCCGGATTTTTTTGTAATTCTTCTCCTTCGTCCTCTCTGATGGAGGAAGAAATATTTTCTTGTGGGCAT
TTTGTTTTGCCTATGGAGTTCTCGATTATTAGTGAGGATCGTGCTTGTACTTTGGTTGTTGGCAGGCTTCGTCTTCTTCACGGCGACAGGGATTCACGGCGAAGAAAGGC
TTGTGCAAGCATTGAAAATGTTGGTAGGATGTTAAGTGCAATAGCCCCAACAAAGAGACAACTTTTTGGGGATGAGGAAATGGTTGATGCTGAAGGAAAAAAGGAAGAAT
ATGCCAAGGGTGAAGATGAATTGTCGAACACCTCGAACAAGACAGAGATTTTGGATGATCAAGACGAACGGATGGAAGATGTTTGTGAAGGAAGACAAGAGGAAGATGAA
CACACCGAAGTAAGAGGCGGTGAAACAGATGAAGAAGATATTGGGTGGAAATCTATCAATGAAGAAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAGCTCTTGAGATTCGAAGAAGGTTGGTCGAAGCACGAGGAAGCCAAGGCGATTATCGAGAAGTCTTGGGAAGGAAGAACAAAATCAAAGGCATCTTCAGTAA
TGAAGGCGCTGGGATGGAAGGAGACGAGGAGATTGGTCAATTTGGTGTTCTCGAGATCAAGAAGGGCATTTTGGCGGGCCAATTTAGTGTCAGCGTCGAGACTCTACCTC
ACAGCGTCCAGACGCTGCCTCGATATATAAATGCAGATTTTTGCGTTTTAGGGCATGCCAAGAGCAAAGAGGAATCCAATGGCCATTTGCTATGGGAGTCCGAAGAGTCA
GCAGAGTCAAGTTTCGTGGTCCCCCCTCCAAATCAAGCTCTGAAGTTGAACTCAGACGCCTCTTGGAGAAGCTTGGAAGGAGTTAGCGGGCTGGGGTGGACAGTTCATGA
CTCCTTTAGGTCTTTGATCATTGCTGGAAGTAAGAAAATAAAAAAGAACTGGTCGATTCTATCTTTGGAAGCCATGGCTATGAGAGAGGGTTTAACAAATTACCTCAATC
ACGGTGAATGTAGATCTCTCCCCCTCATCGTGGAGTTTGATTCGACAGGACTGATCAAGCTACTTCAGGGGAAGGACACCAATCTCTTTAAAGCAAGAAACATCTTGGAG
GATGTCGGGTTCCTAGACACAGATTTTGCTCCCTCAAGTCGCCCAGCAACAGATTCTGCACAAAATGATTTCCAAAGCTTCCATTCTTCCAAATGGGTTAAAACATACGA
CATCGAGAATTTGGCGAGAGAAGCGATTAGCACCTCCTTTTCATGGTGGCCGAGGTCATGCAATTGGGCAGCAAACTTCTTAGCTCAAAATGCAAGAAATTCCAATTCGA
CAGAACCTCATTCGAGAGGAATTTCATTGGACCAGGGTGATCCCGGATTTTTTTGTAATTCTTCTCCTTCGTCCTCTCTGATGGAGGAAGAAATATTTTCTTGTGGGCAT
TTTGTTTTGCCTATGGAGTTCTCGATTATTAGTGAGGATCGTGCTTGTACTTTGGTTGTTGGCAGGCTTCGTCTTCTTCACGGCGACAGGGATTCACGGCGAAGAAAGGC
TTGTGCAAGCATTGAAAATGTTGGTAGGATGTTAAGTGCAATAGCCCCAACAAAGAGACAACTTTTTGGGGATGAGGAAATGGTTGATGCTGAAGGAAAAAAGGAAGAAT
ATGCCAAGGGTGAAGATGAATTGTCGAACACCTCGAACAAGACAGAGATTTTGGATGATCAAGACGAACGGATGGAAGATGTTTGTGAAGGAAGACAAGAGGAAGATGAA
CACACCGAAGTAAGAGGCGGTGAAACAGATGAAGAAGATATTGGGTGGAAATCTATCAATGAAGAAGTTTAG
Protein sequenceShow/hide protein sequence
MKKALEIRRRLVEARGSQGDYREVLGRKNKIKGIFSNEGAGMEGDEEIGQFGVLEIKKGILAGQFSVSVETLPHSVQTLPRYINADFCVLGHAKSKEESNGHLLWESEES
AESSFVVPPPNQALKLNSDASWRSLEGVSGLGWTVHDSFRSLIIAGSKKIKKNWSILSLEAMAMREGLTNYLNHGECRSLPLIVEFDSTGLIKLLQGKDTNLFKARNILE
DVGFLDTDFAPSSRPATDSAQNDFQSFHSSKWVKTYDIENLAREAISTSFSWWPRSCNWAANFLAQNARNSNSTEPHSRGISLDQGDPGFFCNSSPSSSLMEEEIFSCGH
FVLPMEFSIISEDRACTLVVGRLRLLHGDRDSRRRKACASIENVGRMLSAIAPTKRQLFGDEEMVDAEGKKEEYAKGEDELSNTSNKTEILDDQDERMEDVCEGRQEEDE
HTEVRGGETDEEDIGWKSINEEV