; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025684 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025684
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA-binding protein 48
Genome locationscaffold13:29327932..29329047
RNA-Seq ExpressionSpg025684
SyntenySpg025684
Gene Ontology termsGO:0005654 - nucleoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR039599 - RNA-binding protein 48


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142975.1 RNA-binding protein 48 isoform X2 [Cucumis sativus]2.6e-1391.49Show/hide
Query:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Subjt:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

XP_008444344.1 PREDICTED: RNA-binding protein 48 isoform X2 [Cucumis melo]2.6e-1375Show/hide
Query:  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        S  + + T + + QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Subjt:  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

XP_011649485.1 RNA-binding protein 48 isoform X1 [Cucumis sativus]2.6e-1391.49Show/hide
Query:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Subjt:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

XP_022132316.1 RNA-binding protein 48-like [Momordica charantia]1.2e-1393.62Show/hide
Query:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        QDYFASESMNQTV LVREKLD+IQS+SEHLQAGPVSKKSRVDNRRRI
Subjt:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

XP_038884635.1 RNA-binding protein 48 isoform X1 [Benincasa hispida]2.6e-1391.49Show/hide
Query:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Subjt:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

TrEMBL top hitse value%identityAlignment
A0A0A0LQL2 RNA-binding protein 481.3e-1391.49Show/hide
Query:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Subjt:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

A0A1S3BA34 RNA-binding protein 481.3e-1375Show/hide
Query:  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        S  + + T + + QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Subjt:  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

A0A1S3BAX9 RNA-binding protein 48 isoform X21.3e-1375Show/hide
Query:  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        S  + + T + + QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Subjt:  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

A0A5A7V5K4 RNA-binding protein 481.3e-1375Show/hide
Query:  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        S  + + T + + QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Subjt:  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

A0A6J1BRX6 RNA-binding protein 485.7e-1493.62Show/hide
Query:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI
        QDYFASESMNQTV LVREKLD+IQS+SEHLQAGPVSKKSRVDNRRRI
Subjt:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-0541.43Show/hide
Query:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS-----------------------KKSRVDNRRRI
        Q+YFAS SMNQTV+ VREKL+KI+ +    +  P S                       K++RVDNRRRI
Subjt:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS-----------------------KKSRVDNRRRI

AT2G27790.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-0541.43Show/hide
Query:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS-----------------------KKSRVDNRRRI
        Q+YFAS SMNQTV+ VREKL+KI+ +    +  P S                       K++RVDNRRRI
Subjt:  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS-----------------------KKSRVDNRRRI

AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein6.7e-0749.15Show/hide
Query:  TMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS------KKSRVDNRRRI
        T + + Q+YFAS SMNQ V+ VREKL+KI+ +    +  P S      K++RVDNRRRI
Subjt:  TMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS------KKSRVDNRRRI

AT5G27300.2 pentatricopeptide (PPR) repeat-containing protein6.7e-0749.15Show/hide
Query:  TMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS------KKSRVDNRRRI
        T + + Q+YFAS SMNQ V+ VREKL+KI+ +    +  P S      K++RVDNRRRI
Subjt:  TMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS------KKSRVDNRRRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCAAACTCACGGTTTACCAAGTATTTTAGTTCATCTATTCTACGAGAGACCATGCTATATGCCTTACAGGATTACTTCGCATCTGAATCTATGAATCAAACTGT
GCGTCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAACCAGCGAACATCTGCAAGCTGGACCTGTGAGCAAGAAATCACGTGTGGACAATAGAAGAAGAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCAAACTCACGGTTTACCAAGTATTTTAGTTCATCTATTCTACGAGAGACCATGCTATATGCCTTACAGGATTACTTCGCATCTGAATCTATGAATCAAACTGT
GCGTCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAACCAGCGAACATCTGCAAGCTGGACCTGTGAGCAAGAAATCACGTGTGGACAATAGAAGAAGAATCTAA
Protein sequenceShow/hide protein sequence
MDANSRFTKYFSSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI