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Spg025707 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025707
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold13:29175836..29176581
RNA-Seq ExpressionSpg025707
SyntenySpg025707
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]8.5e-1332.8Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK------------VQSLLIHRIERVEWGAPFQRNKQKA---LTGTMRAIATSKDHRIITSQ
        MKR + A+++M GP CS FGWNDE KCI AEKEVF+ W+K              + L      +++   + +    +   L GT  A    ++HR ++S 
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK------------VQSLLIHRIERVEWGAPFQRNKQKA---LTGTMRAIATSKDHRIITSQ

Query:  CLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK
          +  RA + A++ +I+R  +  +  Q   IA+WP  Q     + R  V   L A  ELT  +R  LMRIL  +       L VP  +K
Subjt:  CLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK

TYK11111.1 retrotransposon protein [Cucumis melo var. makuwa]8.8e-1032.8Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAW--VKVQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIAT--SKD--------HRIITSQCLQ
        MKR + A+++M GP CS FGWNDE KCI AEKEVFD W    V+ LL       +    +   K +A  G   + A   S D         R   S   +
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAW--VKVQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIAT--SKD--------HRIITSQCLQ

Query:  WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK
          R  +  ++ +I+R ++     Q  +IA+W   Q     + R  +   L A  ELT  +R  LMRIL  +       L VP  +K
Subjt:  WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK

TYK15304.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-0930.69Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK--------VQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIA------------------
        MKR + A+++M GP CS FGWNDE KCI  EKEVFD WVK        +     H  ER+     +   K +A  G  ++ A                  
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK--------VQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIA------------------

Query:  TSKDHRIITSQCLQ------WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLS
           D   + SQ L        G  +    + +I+  ++  +  Q  +IA+WP  Q     + R  V   L A  ELT  +R SLM IL  +       L 
Subjt:  TSKDHRIITSQCLQ------WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLS

Query:  VP
        VP
Subjt:  VP

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.0e-0927.35Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVKVQSL---LIHRI------------------ERVEWGAPFQRNKQKALTGTMRAIATSKDH
        +K+ Y AI++M GP CS FGWN+EF+CI AE+++FD+W+K       L+H+                    R E       N       T+  +  S D 
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVKVQSL---LIHRI------------------ERVEWGAPFQRNKQKALTGTMRAIATSKDH

Query:  RIIT---------------------------SQCLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSL
         I T                           S   +  R     E +E++R  +     Q   IADWP  +   E + R  V + L    +L   +R  L
Subjt:  RIIT---------------------------SQCLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSL

Query:  MRILFADPKMTNMMLSVPPTLKL
        M+ILF   +     LS+P  LKL
Subjt:  MRILFADPKMTNMMLSVPPTLKL

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]4.2e-1229.95Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVKV---------QSLL---------------IHRIERVEWGAPFQR---NKQKALTGTMRAI
        +K+QY+A+S+ML    S FGWN+EFKC++ EKE+FD WV+          +S L                H  E  +  +P  +   +++ A   T RA 
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVKV---------QSLL---------------IHRIERVEWGAPFQR---NKQKALTGTMRAI

Query:  ATSKDHRIITSQCLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVP
          ++     +S+  +  R  ++AE ++IMR +V MQ T   ++A W   +   EF RR  V   + +   L +D++V+ + +L  D + T+  L+VP
Subjt:  ATSKDHRIITSQCLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVP

TrEMBL top hitse value%identityAlignment
A0A5A7TDD6 Retrotransposon protein4.1e-1332.8Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK------------VQSLLIHRIERVEWGAPFQRNKQKA---LTGTMRAIATSKDHRIITSQ
        MKR + A+++M GP CS FGWNDE KCI AEKEVF+ W+K              + L      +++   + +    +   L GT  A    ++HR ++S 
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK------------VQSLLIHRIERVEWGAPFQRNKQKA---LTGTMRAIATSKDHRIITSQ

Query:  CLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK
          +  RA + A++ +I+R  +  +  Q   IA+WP  Q     + R  V   L A  ELT  +R  LMRIL  +       L VP  +K
Subjt:  CLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK

A0A5A7U0H7 Retrotransposon protein9.5e-1027.35Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVKVQSL---LIHRI------------------ERVEWGAPFQRNKQKALTGTMRAIATSKDH
        +K+ Y AI++M GP CS FGWN+EF+CI AE+++FD+W+K       L+H+                    R E       N       T+  +  S D 
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVKVQSL---LIHRI------------------ERVEWGAPFQRNKQKALTGTMRAIATSKDH

Query:  RIIT---------------------------SQCLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSL
         I T                           S   +  R     E +E++R  +     Q   IADWP  +   E + R  V + L    +L   +R  L
Subjt:  RIIT---------------------------SQCLQWGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSL

Query:  MRILFADPKMTNMMLSVPPTLKL
        M+ILF   +     LS+P  LKL
Subjt:  MRILFADPKMTNMMLSVPPTLKL

A0A5A7UXH8 Retrotransposon protein9.5e-1028.49Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK------------VQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIATSKDHRIITSQCLQ
        MKR + A+++M GP CS FGWNDE KCI AEKEVFD W +              +         ++   +      +    M         R   S   +
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK------------VQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIATSKDHRIITSQCLQ

Query:  WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK
          R  +  ++ +I+R ++  +  Q  +IA+WP  Q     + R  +   L A  ELT  +R  LMRIL  +       L V   +K
Subjt:  WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK

A0A5D3CH30 Retrotransposon protein4.2e-1032.8Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAW--VKVQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIAT--SKD--------HRIITSQCLQ
        MKR + A+++M GP CS FGWNDE KCI AEKEVFD W    V+ LL       +    +   K +A  G   + A   S D         R   S   +
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAW--VKVQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIAT--SKD--------HRIITSQCLQ

Query:  WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK
          R  +  ++ +I+R ++     Q  +IA+W   Q     + R  +   L A  ELT  +R  LMRIL  +       L VP  +K
Subjt:  WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLK

A0A5D3CWJ7 Retrotransposon protein9.5e-1030.69Show/hide
Query:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK--------VQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIA------------------
        MKR + A+++M GP CS FGWNDE KCI  EKEVFD WVK        +     H  ER+     +   K +A  G  ++ A                  
Subjt:  MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVK--------VQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIA------------------

Query:  TSKDHRIITSQCLQ------WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLS
           D   + SQ L        G  +    + +I+  ++  +  Q  +IA+WP  Q     + R  V   L A  ELT  +R SLM IL  +       L 
Subjt:  TSKDHRIITSQCLQ------WGRALYEAEALEIMRQSVYMQETQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLS

Query:  VP
        VP
Subjt:  VP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGGCAGTACAGTGCAATATCGAAGATGTTGGGTCCAGGTTGTAGTTGGTTTGGGTGGAATGACGAGTTCAAGTGCATCAAAGCTGAGAAGGAAGTGTTTGATGC
ATGGGTGAAGGTACAGTCATTATTGATTCATAGGATTGAGCGAGTGGAGTGGGGTGCTCCGTTCCAGCGGAACAAGCAGAAAGCACTCACGGGGACGATGAGGGCGATTG
CAACTTCCAAGGATCACAGGATTATTACGTCCCAGTGCCTCCAGTGGGGGCGGGCATTGTATGAAGCAGAAGCGCTTGAAATCATGAGGCAGTCAGTGTACATGCAAGAG
ACTCAGTTCACCAAAATTGCTGACTGGCCCGACACGCAGGAAACAAGGGAGTTCAAGCGTCGCGACACAGTGTCGGAGATGCTCCTGGCCCAGCTGGAGCTGACAGACGA
CGAGAGAGTGTCCCTAATGCGTATTCTCTTCGCCGACCCGAAAATGACGAACATGATGCTTTCTGTCCCACCGACCCTCAAACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACGGCAGTACAGTGCAATATCGAAGATGTTGGGTCCAGGTTGTAGTTGGTTTGGGTGGAATGACGAGTTCAAGTGCATCAAAGCTGAGAAGGAAGTGTTTGATGC
ATGGGTGAAGGTACAGTCATTATTGATTCATAGGATTGAGCGAGTGGAGTGGGGTGCTCCGTTCCAGCGGAACAAGCAGAAAGCACTCACGGGGACGATGAGGGCGATTG
CAACTTCCAAGGATCACAGGATTATTACGTCCCAGTGCCTCCAGTGGGGGCGGGCATTGTATGAAGCAGAAGCGCTTGAAATCATGAGGCAGTCAGTGTACATGCAAGAG
ACTCAGTTCACCAAAATTGCTGACTGGCCCGACACGCAGGAAACAAGGGAGTTCAAGCGTCGCGACACAGTGTCGGAGATGCTCCTGGCCCAGCTGGAGCTGACAGACGA
CGAGAGAGTGTCCCTAATGCGTATTCTCTTCGCCGACCCGAAAATGACGAACATGATGCTTTCTGTCCCACCGACCCTCAAACTTTGA
Protein sequenceShow/hide protein sequence
MKRQYSAISKMLGPGCSWFGWNDEFKCIKAEKEVFDAWVKVQSLLIHRIERVEWGAPFQRNKQKALTGTMRAIATSKDHRIITSQCLQWGRALYEAEALEIMRQSVYMQE
TQFTKIADWPDTQETREFKRRDTVSEMLLAQLELTDDERVSLMRILFADPKMTNMMLSVPPTLKL