; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025736 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025736
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:29981100..29982442
RNA-Seq ExpressionSpg025736
SyntenySpg025736
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EMS61533.1 putative disease resistance RPP8-like protein 4 [Triticum urartu]1.1e-0533.33Show/hide
Query:  QKISIQRSLQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYE
        Q+IS   ++  ++ + GA L D  G  I    +K+D   D+   EA A+  G+   +     R   L + SD L VI+ +N  G       ++ DD  Y 
Subjt:  QKISIQRSLQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYE

Query:  SSCLQLVEFSHCNRLANTVAHWLARKASF
        +    +  F HCNR AN VAH LAR A F
Subjt:  SSCLQLVEFSHCNRLANTVAHWLARKASF

XP_021745098.1 uncharacterized protein LOC110711034 [Chenopodium quinoa]8.1e-0633.02Show/hide
Query:  LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYESSCLQLVEFSHCNRLANTV
        + D  G++I   ++K    W +++ EA+ +  G++  R     R   +QVESDAL+V+  +  + +  S   L++DDII  S        SH  R  NTV
Subjt:  LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYESSCLQLVEFSHCNRLANTV

Query:  AHWLAR
        AH +AR
Subjt:  AHWLAR

XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]8.6e-0832.81Show/hide
Query:  GFQKISIQRSLQKVQSSCG---ALHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDD
        GF K+++       + +CG    + D  G ++ +G++++   W+++I EA AI  G++      ++    L VESD L VI+AL  +  DLSE+ L++DD
Subjt:  GFQKISIQRSLQKVQSSCG---ALHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDD

Query:  IIYESSCLQLVEFSHCNRLANTVAHWLA
        I+   S    V +S+  R  N VAH+ A
Subjt:  IIYESSCLQLVEFSHCNRLANTVAHWLA

XP_021840770.1 uncharacterized protein LOC110780758, partial [Spinacia oleracea]1.1e-0531.01Show/hide
Query:  GAGFQKISIQRS-LQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVD
        G G+ K+++    L +V +  GA + D+ G ++G  + +   +W+ ++ EA A+L G+K   +   ++   + VE D L +++AL G   D S + L+++
Subjt:  GAGFQKISIQRS-LQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVD

Query:  DIIYESSCLQLVEFSHCNRLANTVAHWLA
        DI   SS    V F    R  N VAH LA
Subjt:  DIIYESSCLQLVEFSHCNRLANTVAHWLA

XP_021847414.1 uncharacterized protein LOC110787151 [Spinacia oleracea]8.1e-0634.65Show/hide
Query:  GFQKISIQRS-LQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDI
        G+ K+++    L +V S  GA + D  G ++   +++   KW   + EA A+L G++   +  +QR   + VESD L VI+AL  E    SE  L+V+DI
Subjt:  GFQKISIQRS-LQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDI

Query:  IYESSCLQLVEFSHCNRLANTVAHWLA
        +   S    V +S   R  N VAH LA
Subjt:  IYESSCLQLVEFSHCNRLANTVAHWLA

TrEMBL top hitse value%identityAlignment
A0A446X0K5 RNase H domain-containing protein1.1e-0531.85Show/hide
Query:  GFQKISIQRSL--QKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDD
        GF K+++  S     ++ + GA L D  G  I    +K+DH  D+ + EA A+  G+   +     R   L + SD L VI+ +   G        + DD
Subjt:  GFQKISIQRSL--QKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDD

Query:  IIYESSCLQLVEFSHCNRLANTVAHWLARKASFLS
          + +    +  F HCNR AN VAH LA+ A F S
Subjt:  IIYESSCLQLVEFSHCNRLANTVAHWLARKASFLS

A0A452ZKI0 RNase H domain-containing protein8.7e-0633.83Show/hide
Query:  GFQKISIQRSLQK--VQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDD
        GF K+++  S  +  ++ + GA L D  G  I  G  KMD   D+   EA A+  G+   +     R   L V SD + VI  +   G        + DD
Subjt:  GFQKISIQRSLQK--VQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDD

Query:  IIYESSCLQLVEFSHCNRLANTVAHWLARKASF
          + +    LV F HCNR AN VAH +AR A F
Subjt:  IIYESSCLQLVEFSHCNRLANTVAHWLARKASF

A0A7N2LIC5 RNase H domain-containing protein1.5e-0534.21Show/hide
Query:  LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYESSCLQLVEFSHCNRLANTV
        L DS G++I    +K+     +++ EA A    +    +  I +   + VE D L VI+ALNG+G  L+    +V++     SCL+L  F H  R  N +
Subjt:  LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYESSCLQLVEFSHCNRLANTV

Query:  AHWLARKASFLSNV
        AH LAR+A   +NV
Subjt:  AHWLARKASFLSNV

A0A803N2H0 Uncharacterized protein3.0e-0636.75Show/hide
Query:  SLQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYESSCLQLV
        SL++  +S GA + D++G +      +++  W+  I EA A+L G++A  D C  RK  L+VESD LS+  A+       S + L++DDI + S  L  V
Subjt:  SLQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYESSCLQLV

Query:  EFSHCNRLANTVAHWLA
         +S   R  N VAH LA
Subjt:  EFSHCNRLANTVAHWLA

M7ZEC3 Putative disease resistance RPP8-like protein 45.1e-0633.33Show/hide
Query:  QKISIQRSLQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYE
        Q+IS   ++  ++ + GA L D  G  I    +K+D   D+   EA A+  G+   +     R   L + SD L VI+ +N  G       ++ DD  Y 
Subjt:  QKISIQRSLQKVQSSCGA-LHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYE

Query:  SSCLQLVEFSHCNRLANTVAHWLARKASF
        +    +  F HCNR AN VAH LAR A F
Subjt:  SSCLQLVEFSHCNRLANTVAHWLARKASF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCATCGAACACTTGGAGAAGCATATGTTGGGGAAGAGACCTTTTCAAGTCAGGATATAGATGGAGAGTGGGAAACGGATGTTGAAGATATTCTAGCTATGCCAAC
TAGCAAGGGAGCAGCTAGAGATGAAGTGATATGGCATTATGACAAAAAAAGGCACCTTCAAAGTGAAAAGCGCGTATATCCTGGCAATGGAGTTAAAAGACCAAGGAGCA
GCATCTCAATCAAACAGTGCAAAAGAAGAGCAACAATGGAAAAGATTATGGAATTCAGGAGAATCTTTGGGAGGCTAAGGATTATTGGAGCTGGATTTCAGAAAATCTCG
ATTCAGAGGAGTTTGCAAAAAGTTCAATCATCATGTGGAGCTTTGCATGACTCGTCTGGATCCCTGATTGGCATTGGCATGAAGAAGATGGACCACAAATGGGATATGAA
AATTCTAGAAGCTTCAGCTATCTTAGAAGGAATTAAGGCAATTCGAGATACCTGTATCCAAAGAAAGACTCTATTGCAAGTGGAGTCTGATGCTTTGTCTGTAATCAAAG
CGTTGAATGGCGAAGGAGATGATCTGTCGGAGATGAAACTGCTCGTCGACGACATCATCTACGAATCATCTTGTCTTCAATTGGTTGAATTTAGCCACTGTAATCGCCTT
GCCAACACAGTAGCCCACTGGTTGGCAAGGAAAGCGTCTTTTTTGTCGAATGTTGGCGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCCATCGAACACTTGGAGAAGCATATGTTGGGGAAGAGACCTTTTCAAGTCAGGATATAGATGGAGAGTGGGAAACGGATGTTGAAGATATTCTAGCTATGCCAAC
TAGCAAGGGAGCAGCTAGAGATGAAGTGATATGGCATTATGACAAAAAAAGGCACCTTCAAAGTGAAAAGCGCGTATATCCTGGCAATGGAGTTAAAAGACCAAGGAGCA
GCATCTCAATCAAACAGTGCAAAAGAAGAGCAACAATGGAAAAGATTATGGAATTCAGGAGAATCTTTGGGAGGCTAAGGATTATTGGAGCTGGATTTCAGAAAATCTCG
ATTCAGAGGAGTTTGCAAAAAGTTCAATCATCATGTGGAGCTTTGCATGACTCGTCTGGATCCCTGATTGGCATTGGCATGAAGAAGATGGACCACAAATGGGATATGAA
AATTCTAGAAGCTTCAGCTATCTTAGAAGGAATTAAGGCAATTCGAGATACCTGTATCCAAAGAAAGACTCTATTGCAAGTGGAGTCTGATGCTTTGTCTGTAATCAAAG
CGTTGAATGGCGAAGGAGATGATCTGTCGGAGATGAAACTGCTCGTCGACGACATCATCTACGAATCATCTTGTCTTCAATTGGTTGAATTTAGCCACTGTAATCGCCTT
GCCAACACAGTAGCCCACTGGTTGGCAAGGAAAGCGTCTTTTTTGTCGAATGTTGGCGATTAG
Protein sequenceShow/hide protein sequence
MLHRTLGEAYVGEETFSSQDIDGEWETDVEDILAMPTSKGAARDEVIWHYDKKRHLQSEKRVYPGNGVKRPRSSISIKQCKRRATMEKIMEFRRIFGRLRIIGAGFQKIS
IQRSLQKVQSSCGALHDSSGSLIGIGMKKMDHKWDMKILEASAILEGIKAIRDTCIQRKTLLQVESDALSVIKALNGEGDDLSEMKLLVDDIIYESSCLQLVEFSHCNRL
ANTVAHWLARKASFLSNVGD