; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg025770 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025770
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:29060507..29069392
RNA-Seq ExpressionSpg025770
SyntenySpg025770
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.0e-1137.06Show/hide
Query:  EKTHQILQQPRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLE
        + T++ L   RR+        W+ P SN WK+N++AAW      GG+GWI+RD  G  I    + IR    I  LE  AI EGL+A+  + C  R IHL 
Subjt:  EKTHQILQQPRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLE

Query:  IESDALEVISVLNETSVDLSDLKSITNAISAMASKLPGVSFRH
         ESD+LE I +L+    D +++  +   I  M   +  VS RH
Subjt:  IESDALEVISVLNETSVDLSDLKSITNAISAMASKLPGVSFRH

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]9.9e-1043.27Show/hide
Query:  PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLEIESDALEVI
        P R     +   W+ P SN WK+N+DAAW       G+GWI+RD  G  I  G + IR    I  LE  AI EGL+A+  + C  R IHL  ESD+LE I
Subjt:  PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLEIESDALEVI

Query:  SVLN
         +L+
Subjt:  SVLN

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]9.9e-1043.27Show/hide
Query:  PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLEIESDALEVI
        P R     +   W+ P SN WK+N+DAAW       G+GWI+RD  G  I  G + IR    I  LE  AI EGL+A+  + C  R IHL  ESD+LE I
Subjt:  PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLEIESDALEVI

Query:  SVLN
         +L+
Subjt:  SVLN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-1038.78Show/hide
Query:  WEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIRRNIHLEIESDALEVISVLNETSVDLS
        WE P  + W +N+DA+W +   RGG+GWI+R  +G  +  G + +     +K+LEA AI EGL+ +++  + R +H  IE+D+ EV S+LN    DL+
Subjt:  WEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIRRNIHLEIESDALEVISVLNETSVDLS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.1e-1139.06Show/hide
Query:  WEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIR-------RNIHLEIESDALEVISVLNET
        W+ P SN WK+N+DAAW      GG+GWI+RD  G  I    + IR    I  LE  AI EGL+A+     R       R IHL  ESD+LE I +L+  
Subjt:  WEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIR-------RNIHLEIESDALEVISVLNET

Query:  SVDLSDLKSITNAISAMASKLPGVSFRH
          D +++  +   I  M   +  VS RH
Subjt:  SVDLSDLKSITNAISAMASKLPGVSFRH

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.9e-1137.06Show/hide
Query:  EKTHQILQQPRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLE
        + T++ L   RR+        W+ P SN WK+N++AAW      GG+GWI+RD  G  I    + IR    I  LE  AI EGL+A+  + C  R IHL 
Subjt:  EKTHQILQQPRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLE

Query:  IESDALEVISVLNETSVDLSDLKSITNAISAMASKLPGVSFRH
         ESD+LE I +L+    D +++  +   I  M   +  VS RH
Subjt:  IESDALEVISVLNETSVDLSDLKSITNAISAMASKLPGVSFRH

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.8e-1043.27Show/hide
Query:  PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLEIESDALEVI
        P R     +   W+ P SN WK+N+DAAW       G+GWI+RD  G  I  G + IR    I  LE  AI EGL+A+  + C  R IHL  ESD+LE I
Subjt:  PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLEIESDALEVI

Query:  SVLN
         +L+
Subjt:  SVLN

A0A6J1DNV9 uncharacterized protein LOC1110224035.6e-1138.78Show/hide
Query:  WEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIRRNIHLEIESDALEVISVLNETSVDLS
        WE P  + W +N+DA+W +   RGG+GWI+R  +G  +  G + +     +K+LEA AI EGL+ +++  + R +H  IE+D+ EV S+LN    DL+
Subjt:  WEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIRRNIHLEIESDALEVISVLNETSVDLS

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X24.8e-1043.27Show/hide
Query:  PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLEIESDALEVI
        P R     +   W+ P SN WK+N+DAAW       G+GWI+RD  G  I  G + IR    I  LE  AI EGL+A+  + C  R IHL  ESD+LE I
Subjt:  PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAV-SDTCIRRNIHLEIESDALEVI

Query:  SVLN
         +L+
Subjt:  SVLN

A0A6J1DSV1 uncharacterized protein LOC1110236081.5e-1139.06Show/hide
Query:  WEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIR-------RNIHLEIESDALEVISVLNET
        W+ P SN WK+N+DAAW      GG+GWI+RD  G  I    + IR    I  LE  AI EGL+A+     R       R IHL  ESD+LE I +L+  
Subjt:  WEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIR-------RNIHLEIESDALEVISVLNET

Query:  SVDLSDLKSITNAISAMASKLPGVSFRH
          D +++  +   I  M   +  VS RH
Subjt:  SVDLSDLKSITNAISAMASKLPGVSFRH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.0e-0534.38Show/hide
Query:  QILQQPRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRK
        QI  + R +R + +H  W +P+    K N D +++  + +   GW+VRDSNGS +  G    RK
Subjt:  QILQQPRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRK

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-0528.83Show/hide
Query:  RQEPERYRRGEPYESRTMV---PPLANCVKLNADASWNSAKARGGIGWVIRDSSGSPIEFGCKKINRPWPIKTLEMAAIREGLRKYMEVDRGRKPPMIVE
        R+E E    G   E    V    P    VK N DA+W     R GIGW++R+ SG  +  G + + R   +   E+ A+R  +   + + R     +I E
Subjt:  RQEPERYRRGEPYESRTMV---PPLANCVKLNADASWNSAKARGGIGWVIRDSSGSPIEFGCKKINRPWPIKTLEMAAIREGLRKYMEVDRGRKPPMIVE

Query:  ADASEVIKALS
        +DA  ++  L+
Subjt:  ADASEVIKALS

AT4G29090.1 Ribonuclease H-like superfamily protein4.6e-0525.4Show/hide
Query:  SQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIRRNIHLEIESDALEVISVLNET
        +++S G W  P     K N+DA W    +R G+GW++R+  G    +G +++ K   +   E EA+   + ++S     +  ++  ESD+  +I +LN  
Subjt:  SQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIRRNIHLEIESDALEVISVLNET

Query:  SVDLSDLKSITNAISAMASKLPGVSF
         +    LK     +  + S+   V F
Subjt:  SVDLSDLKSITNAISAMASKLPGVSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGGAGAGATGGGTCCCAATAACCATAGAGAAATTACCGGACTTTTGTTATCAGTTTGGAAGAGTGGGTCACGTGATGAAGGATTGTGAGGAGGATGAAAGTGA
GGAAGATGAAGAGGAAGAAAAAAGGCAGTACGACCCGTGGTTAAGAGAGAACTACATAAGGGAAAAATGGAGCAAACCAGTGAAGGAAAATGACAGTAGCAGATCGAAGG
GAAGAAAGACGGAAAACACAGAAGTTCAGCGAGAAGGAATCGAAATGGAGAAGGGCGAAACATCGAATGGGGGAAATGAACTGCCGGTGAACCAACAGTTGTCGGAAAAT
CAGATGGGCTTGGAAGCGGTGGTGGGGGAAAAGGACAAAATTCCATCATTAGTGGGACTAGCAGTGTTAGAGGAACAACAAAATAGAGCCGTTGTGGAAGATAGAGAAAC
GAATGAGCTGAAAAACAGTGGTACGGTGTCAGGTAAAAAAGAGGCAGAACAAAAGGATAAGACAAAAGGAAACGTGAGTTCTGAAAGGTGGGACCCAGACATGGAAAAAG
TGGCTATCAGTGATCAGCAGGGAAGGCAAATTCCAGAGGAAGAAAAGTTACAAGGCCAAGAAAAATGGGAAAACCAGGAGGGAAAGAAGGCCCAAAGCGCAAAAGGAAAA
GCATTGGTGGGATTGGATATTGAGCAAAACAAATTCAGAGAAAAGAGAAACAGTGGCGATTATCAGCTGGGCCATATGGAATTACAGGAATCAAATTACGATGGACAACG
AGAAAGCAGAACCAAACAAGTTAATCAGACAGATCAAGAGGAGTATTGCAGAGCAGAGAAGAAGTTCAGACAAGAACCTGAAAGGTATCGGCGGGGAGAGCCTTATGAAT
CAAGAACGATGGTCCCCCCTCTTGCTAATTGCGTGAAGCTGAACGCCGATGCATCGTGGAATTCAGCGAAAGCGAGAGGAGGAATTGGGTGGGTAATTCGTGATTCATCA
GGATCTCCAATTGAGTTTGGCTGCAAGAAAATTAATCGACCATGGCCAATCAAGACGCTGGAAATGGCTGCGATCAGAGAAGGTTTGAGGAAGTACATGGAGGTGGATAG
AGGGAGGAAGCCGCCGATGATTGTTGAAGCGGACGCATCTGAAGTTATCAAAGCTCTATCCTTCGAATGTGAAGAGCTCTCAGACTCAAAGACAATGATGTTGGAGGTTG
AGTCCCTTGGGCTGCCGGAATCCCTATATTCTGAGACTGTAAATACTTCAAATACATGTGTAGGCAAACAGATCAAAGAATGGGAGAAGACTCACCAAATTCTCCAGCAG
CCAAGAAGATTGAGGAGCCAAGCGAGTCATGGATCGTGGGAGAAGCCGCAAAGCAACCGCTGGAAGATGAACTCGGATGCCGCCTGGATCGAGAAGGAGAAGCGCGGTGG
ATTAGGTTGGATAGTCCGCGACTCGAATGGATCCACAATCTGTCTTGGAATGAAATCGATTAGGAAAAATTGGCCAATCAAAATGCTGGAAGCTGAAGCAATTTTCGAAG
GCCTTAAGGCCGTTTCTGATACCTGCATTCGTAGAAACATACACCTGGAGATCGAGTCAGACGCCCTCGAGGTGATCAGCGTTCTGAACGAAACCTCGGTAGACCTCTCA
GACTTGAAATCTATCACGAACGCCATCTCCGCCATGGCCTCGAAGCTGCCGGGTGTATCTTTCCGCCAT
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGGAGAGATGGGTCCCAATAACCATAGAGAAATTACCGGACTTTTGTTATCAGTTTGGAAGAGTGGGTCACGTGATGAAGGATTGTGAGGAGGATGAAAGTGA
GGAAGATGAAGAGGAAGAAAAAAGGCAGTACGACCCGTGGTTAAGAGAGAACTACATAAGGGAAAAATGGAGCAAACCAGTGAAGGAAAATGACAGTAGCAGATCGAAGG
GAAGAAAGACGGAAAACACAGAAGTTCAGCGAGAAGGAATCGAAATGGAGAAGGGCGAAACATCGAATGGGGGAAATGAACTGCCGGTGAACCAACAGTTGTCGGAAAAT
CAGATGGGCTTGGAAGCGGTGGTGGGGGAAAAGGACAAAATTCCATCATTAGTGGGACTAGCAGTGTTAGAGGAACAACAAAATAGAGCCGTTGTGGAAGATAGAGAAAC
GAATGAGCTGAAAAACAGTGGTACGGTGTCAGGTAAAAAAGAGGCAGAACAAAAGGATAAGACAAAAGGAAACGTGAGTTCTGAAAGGTGGGACCCAGACATGGAAAAAG
TGGCTATCAGTGATCAGCAGGGAAGGCAAATTCCAGAGGAAGAAAAGTTACAAGGCCAAGAAAAATGGGAAAACCAGGAGGGAAAGAAGGCCCAAAGCGCAAAAGGAAAA
GCATTGGTGGGATTGGATATTGAGCAAAACAAATTCAGAGAAAAGAGAAACAGTGGCGATTATCAGCTGGGCCATATGGAATTACAGGAATCAAATTACGATGGACAACG
AGAAAGCAGAACCAAACAAGTTAATCAGACAGATCAAGAGGAGTATTGCAGAGCAGAGAAGAAGTTCAGACAAGAACCTGAAAGGTATCGGCGGGGAGAGCCTTATGAAT
CAAGAACGATGGTCCCCCCTCTTGCTAATTGCGTGAAGCTGAACGCCGATGCATCGTGGAATTCAGCGAAAGCGAGAGGAGGAATTGGGTGGGTAATTCGTGATTCATCA
GGATCTCCAATTGAGTTTGGCTGCAAGAAAATTAATCGACCATGGCCAATCAAGACGCTGGAAATGGCTGCGATCAGAGAAGGTTTGAGGAAGTACATGGAGGTGGATAG
AGGGAGGAAGCCGCCGATGATTGTTGAAGCGGACGCATCTGAAGTTATCAAAGCTCTATCCTTCGAATGTGAAGAGCTCTCAGACTCAAAGACAATGATGTTGGAGGTTG
AGTCCCTTGGGCTGCCGGAATCCCTATATTCTGAGACTGTAAATACTTCAAATACATGTGTAGGCAAACAGATCAAAGAATGGGAGAAGACTCACCAAATTCTCCAGCAG
CCAAGAAGATTGAGGAGCCAAGCGAGTCATGGATCGTGGGAGAAGCCGCAAAGCAACCGCTGGAAGATGAACTCGGATGCCGCCTGGATCGAGAAGGAGAAGCGCGGTGG
ATTAGGTTGGATAGTCCGCGACTCGAATGGATCCACAATCTGTCTTGGAATGAAATCGATTAGGAAAAATTGGCCAATCAAAATGCTGGAAGCTGAAGCAATTTTCGAAG
GCCTTAAGGCCGTTTCTGATACCTGCATTCGTAGAAACATACACCTGGAGATCGAGTCAGACGCCCTCGAGGTGATCAGCGTTCTGAACGAAACCTCGGTAGACCTCTCA
GACTTGAAATCTATCACGAACGCCATCTCCGCCATGGCCTCGAAGCTGCCGGGTGTATCTTTCCGCCAT
Protein sequenceShow/hide protein sequence
MAEERWVPITIEKLPDFCYQFGRVGHVMKDCEEDESEEDEEEEKRQYDPWLRENYIREKWSKPVKENDSSRSKGRKTENTEVQREGIEMEKGETSNGGNELPVNQQLSEN
QMGLEAVVGEKDKIPSLVGLAVLEEQQNRAVVEDRETNELKNSGTVSGKKEAEQKDKTKGNVSSERWDPDMEKVAISDQQGRQIPEEEKLQGQEKWENQEGKKAQSAKGK
ALVGLDIEQNKFREKRNSGDYQLGHMELQESNYDGQRESRTKQVNQTDQEEYCRAEKKFRQEPERYRRGEPYESRTMVPPLANCVKLNADASWNSAKARGGIGWVIRDSS
GSPIEFGCKKINRPWPIKTLEMAAIREGLRKYMEVDRGRKPPMIVEADASEVIKALSFECEELSDSKTMMLEVESLGLPESLYSETVNTSNTCVGKQIKEWEKTHQILQQ
PRRLRSQASHGSWEKPQSNRWKMNSDAAWIEKEKRGGLGWIVRDSNGSTICLGMKSIRKNWPIKMLEAEAIFEGLKAVSDTCIRRNIHLEIESDALEVISVLNETSVDLS
DLKSITNAISAMASKLPGVSFRH