CuGenDBv2

Gene ID	Spg025779
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	50S ribosomal protein L32, chloroplastic
Genome location	scaffold7:2580116..2583003
RNA-Seq Expression	Spg025779
Synteny	Spg025779
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR011332 - Zinc-binding ribosomal protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574067.1 hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia]

6.0e-49

90.99

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGSM GLKAM  VLP SSP+SGIMDRKDS PPLVLPEF HESDRD INNCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

XP_022151273.1 uncharacterized protein LOC111019232 [Momordica charantia]

3.5e-49

93.69

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRAVEGQT SMLGLKAMANVLP  SPLSGIMDRKDSTPPLVLPEF HESD DRI NCS VGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

XP_022945635.1 uncharacterized protein LOC111449817 [Cucurbita moschata]

3.0e-48

90.09

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGSM GLKAMANVLP SSP++GI+ RKDS PPLVLPEF HESDRD INNCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

XP_022968104.1 uncharacterized protein LOC111467436 [Cucurbita maxima]

2.7e-49

91.89

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGSM GLKAMA VLP SSP+SGIMD KDS PPLVLPEF HESDRD INNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

XP_023541204.1 uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]

9.3e-50

91.89

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGSM GLKAM  VLP SSP+SGIMDRKDS PPLVLPEF HESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQP7 50S ribosomal protein L32, chloroplastic

2.0e-42

81.98

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRA+EGQ GSMLGLKAMA  LP SSP+SG+M  KDS PPLVLPEF  E D D+ NNCSIVGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVI+RC
Subjt:  ALKPIPVIIRC

A0A5A7SYB6 50S ribosomal protein L32, chloroplastic

2.2e-41

83.78

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRA+EGQTGSMLGLKAMA  LP SS   G+M  KDS PPLVLPEF  ESD DRINNCSIVGFGFPSL FSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

A0A6J1DBR3 50S ribosomal protein L32, chloroplastic

1.7e-49

93.69

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRAVEGQT SMLGLKAMANVLP  SPLSGIMDRKDSTPPLVLPEF HESD DRI NCS VGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

A0A6J1G1I2 50S ribosomal protein L32, chloroplastic

1.4e-48

90.09

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGSM GLKAMANVLP SSP++GI+ RKDS PPLVLPEF HESDRD INNCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

A0A6J1HYN6 50S ribosomal protein L32, chloroplastic

1.3e-49

91.89

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Query:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGSM GLKAMA VLP SSP+SGIMD KDS PPLVLPEF HESDRD INNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRC
        ALKPIPVIIRC
Subjt:  ALKPIPVIIRC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G26740.1 Ribosomal L32p protein family

3.8e-25

52.21

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Query:  MALRI--MRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNG
        MALR+  ++    ++  +L  +++++V    SPL+G  DR  S PPLVLPEF  + ++  +      GFG PS +F+GSMELMAVPK+K+S HKRGIRNG
Subjt:  MALRI--MRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNG

Query:  PKALKPIPVIIRC
        PKALKP+PVIIRC
Subjt:  PKALKPIPVIIRC

AT1G69485.1 Ribosomal L32p protein family

6.9e-11

85.29

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Query:  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRC
        MELMAVPK+K+S HKRGIRNGPKA KP PVIIRC
Subjt:  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRC

Sequences

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CDS sequence

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ATGGCGTTGAGGATTATGAGGGCGGTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTAATGTTTTACCTCAATCTTCGCCGTTATCTGGGATCATGGA
CCGTAAGGATTCCACGCCGCCGCTTGTTCTGCCGGAGTTTTACCATGAATCTGACAGGGACAGGATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGTTTATCTT
TTTCCGGCTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAAGGCTCTAAAACCTATTCCAGTTATAATTCGA
TGCAATTGTTTTTTCACAACAGCTGAACTTACACCTGATTATGATTTGTGCTTCATCTCGGATGTATTTCAGTATGATCAATCGAGTTCTTGCAAACTTTTGACCTGTAG
TTCAGGAGTTGTGGTAAAGTCAAGCTGCCTCACTTCTATTGTTGCAGTGGAAGGACAGGGGAGCAGGATAACTCAGCCAGATGAGCCAATGCAGGGTAAAAAGGACAGAC
TGAAAAGGGCTTAA

mRNA sequence

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Protein sequence

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MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIR
CNCFFTTAELTPDYDLCFISDVFQYDQSSSCKLLTCSSGVVVKSSCLTSIVAVEGQGSRITQPDEPMQGKKDRLKRA

Spg025779 (gene) of Sponge gourd (cylindrica) v1 genome