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Spg025821 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025821
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold7:335278..335731
RNA-Seq ExpressionSpg025821
SyntenySpg025821
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151778.1 chlorophyll a-b binding protein 7, chloroplastic [Momordica charantia]1.0e-3693.33Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAIAAVAI SSS QKNGCPKAC+FVTGKKLRLRKYTA AVAPRSA VCAAADP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

XP_022945038.1 chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita moschata]7.5e-3590Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAI AVAI SSS QKNGCPKA +FVTGKKLRLRKYT   VAPRSAPVCAAADP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

XP_022957420.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata]6.7e-3691.11Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAIAAVAI SSS QKNGCPK  +F+TGK+LRLRKYTA AVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

XP_022966812.1 chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita maxima]1.5e-3591.11Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAIA VAI SSS QKNGCPKA +FVTGKKLRLRKYT  AVAPRSAPVCAAADP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

XP_023541134.1 chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pepo]1.5e-3591.11Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAIA VAI SSS QKNGCPKA +FVTGKKLRLRKYT  AVAPRSAPVCAAADP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

TrEMBL top hitse value%identityAlignment
A0A6J1DD44 Chlorophyll a-b binding protein, chloroplastic5.0e-3793.33Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAIAAVAI SSS QKNGCPKAC+FVTGKKLRLRKYTA AVAPRSA VCAAADP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

A0A6J1FZP5 Chlorophyll a-b binding protein, chloroplastic3.6e-3590Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAI AVAI SSS QKNGCPKA +FVTGKKLRLRKYT   VAPRSAPVCAAADP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

A0A6J1H0H5 Chlorophyll a-b binding protein, chloroplastic3.3e-3691.11Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAIAAVAI SSS QKNGCPK  +F+TGK+LRLRKYTA AVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

A0A6J1HNZ1 Chlorophyll a-b binding protein, chloroplastic7.3e-3691.11Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAIA VAI SSS QKNGCPKA +FVTGKKLRLRKYT  AVAPRSAPVCAAADP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

A0A6J1KAB5 Chlorophyll a-b binding protein, chloroplastic3.3e-3691.11Show/hide
Query:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASSAIAAVAI SSS QKNGCPK  +F+TGK+LRLRKYTA AVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAI-SSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

SwissProt top hitse value%identityAlignment
P10708 Chlorophyll a-b binding protein 7, chloroplastic6.6e-2665.62Show/hide
Query:  MASACASSAIAAVAISS-SRQKNGC---PKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLVRE
        MASACASS IAAVA SS S ++NG        SF+ G++LR+ KY+ T  A  +  VC AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL  +
Subjt:  MASACASSAIAAVAISS-SRQKNGC---PKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLVRE

P13869 Chlorophyll a-b binding protein, chloroplastic1.5e-2270.21Show/hide
Query:  MASACASSAIAAVAISS-SRQKNGC---PKACSFVTGKKLRLRKYTATAVAPRSAPVCA-AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MASACASS IAAVA SS S QKNG        SF+ GK+LR+ K+ A  V  RS  V A AADPDRPLWFPGSTPP WLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAISS-SRQKNGC---PKACSFVTGKKLRLRKYTATAVAPRSAPVCA-AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

P27525 Chlorophyll a-b binding protein CP24 10B, chloroplastic2.0e-0644.59Show/hide
Query:  SFVTGKK----LRLRKYTATAVAPRSAPVCAAADPDRPLWFP------GSTPPPWLDGSLPGDFGFDPLGLVRE
        SF+TG K    L     TA    P+   V AAA   +  W P          P WLDGSLPGDFGFDPLGL ++
Subjt:  SFVTGKK----LRLRKYTATAVAPRSAPVCAAADPDRPLWFP------GSTPPPWLDGSLPGDFGFDPLGLVRE

Q8LCQ4 Photosystem I chlorophyll a/b-binding protein 6, chloroplastic4.4e-1447.31Show/hide
Query:  MASACASSAIAAVAISSSRQKNGCPK----ACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MA A AS+  + + +S+SR +N   +    A +  TG +L   +          + VC    PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAISSSRQKNGCPK----ACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

Q9SYW8 Photosystem I chlorophyll a/b-binding protein 2, chloroplastic3.9e-1862.22Show/hide
Query:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRL-RKYTATAVAPRSAPVCA-AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        +S CASSAIAA++            + SF+ GKKLRL +K T  AV+   A V A AADPDRP+WFPGSTPP WLDGSLPGDFGFDPLGL
Subjt:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRL-RKYTATAVAPRSAPVCA-AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

Arabidopsis top hitse value%identityAlignment
AT1G19150.1 photosystem I light harvesting complex gene 63.1e-1547.31Show/hide
Query:  MASACASSAIAAVAISSSRQKNGCPK----ACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        MA A AS+  + + +S+SR +N   +    A +  TG +L   +          + VC    PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL
Subjt:  MASACASSAIAAVAISSSRQKNGCPK----ACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

AT3G08940.1 light harvesting complex photosystem II7.0e-0737.5Show/hide
Query:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        ++A A+S+I    + S    N       F  G K    K   T ++            DRPLWFPG+  P +LDGSL GD+GFDP GL
Subjt:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

AT3G08940.2 light harvesting complex photosystem II7.0e-0737.5Show/hide
Query:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        ++A A+S+I    + S    N       F  G K    K   T ++            DRPLWFPG+  P +LDGSL GD+GFDP GL
Subjt:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

AT3G61470.1 photosystem I light harvesting complex gene 22.7e-1962.22Show/hide
Query:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRL-RKYTATAVAPRSAPVCA-AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        +S CASSAIAA++            + SF+ GKKLRL +K T  AV+   A V A AADPDRP+WFPGSTPP WLDGSLPGDFGFDPLGL
Subjt:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRL-RKYTATAVAPRSAPVCA-AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL

AT5G01530.1 light harvesting complex photosystem II9.2e-0737.5Show/hide
Query:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL
        A+A A+S+I    ++             F  GKK    K +A                DRPLW+PG+  P WLDGSL GD+GFDP GL
Subjt:  ASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGGCTTGTGCTTCTTCTGCCATTGCGGCTGTGGCGATTTCTTCATCTAGGCAAAAGAATGGCTGCCCCAAGGCTTGTAGTTTCGTCACCGGAAAGAAGCTGAG
GCTGAGAAAGTACACAGCCACTGCCGTTGCTCCTCGATCAGCTCCGGTGTGTGCCGCGGCTGACCCCGACAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCTCCATGGC
TCGACGGCAGCCTCCCCGGTGACTTTGGCTTCGACCCTCTTGGTCTCGTTAGAGAGGGTAATGCTACATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGGCTTGTGCTTCTTCTGCCATTGCGGCTGTGGCGATTTCTTCATCTAGGCAAAAGAATGGCTGCCCCAAGGCTTGTAGTTTCGTCACCGGAAAGAAGCTGAG
GCTGAGAAAGTACACAGCCACTGCCGTTGCTCCTCGATCAGCTCCGGTGTGTGCCGCGGCTGACCCCGACAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCTCCATGGC
TCGACGGCAGCCTCCCCGGTGACTTTGGCTTCGACCCTCTTGGTCTCGTTAGAGAGGGTAATGCTACATTTTAG
Protein sequenceShow/hide protein sequence
MASACASSAIAAVAISSSRQKNGCPKACSFVTGKKLRLRKYTATAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLVREGNATF