CuGenDBv2

Gene ID	Spg025827
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ran guanine nucleotide release factor
Genome location	scaffold7:2389465..2393718
RNA-Seq Expression	Spg025827
Synteny	Spg025827
Gene Ontology terms	GO:0006606 - protein import into nucleus (biological process) GO:0005634 - nucleus (cellular component) GO:0005085 - guanyl-nucleotide exchange factor activity (molecular function) GO:0031267 - small GTPase binding (molecular function)
InterPro domains	IPR007681 - Ran-interacting Mog1 protein IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601426.1 putative ran guanine nucleotide release factor, partial [Cucurbita argyrosperma subsp. sororia]

9.5e-64

66.98

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Query:  SPSSQNHSSVPDIQLQEGDERLDSLKRIWVLIKMPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAV
        +P     +S+  ++    D+ L ++   WVLIKM EDFSSE ALFGGAIVSTFP+RF            QEVFVDPSRDESLIFELLDFKHDV DNGSAV
Subjt:  SPSSQNHSSVPDIQLQEGDERLDSLKRIWVLIKMPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAV

Query:  WFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGT
        WFLQDLATEQDAEGS+VIEQSGVIE PGLCY NIPSVVTTAVGQM                          AISKGRQGREAQNIVRVYLANLRLK VGT
Subjt:  WFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGT

Query:  DVLICAYEPILI
        DVLICAYEPILI
Subjt:  DVLICAYEPILI

XP_022151170.1 probable ran guanine nucleotide release factor [Momordica charantia]

5.8e-61

74.86

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        MPEDFSSE  LFGGAIVSTFPLRF            QEVFVDPSRDESLIFELLDFKHDVGD+GSAVWFLQDLA+EQDAEG+MVIEQSGVIEAPGLC+GN
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        I SVVTTAVGQM                          AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

XP_022957477.1 probable ran guanine nucleotide release factor [Cucurbita moschata]

6.4e-60

74.3

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        M EDFSSE ALFGGAIVSTFP+RF            QEVFVDPSRDESLIFELLDFKHDV DNGSAVWFLQDLATEQDAEGS+VIEQSGVIE PGLCY N
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        IPSVVTTAVGQM                          AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILI
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

XP_022987588.1 probable ran guanine nucleotide release factor [Cucurbita maxima]

1.3e-60

75.42

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        M EDFSSE ALFGGAIVSTFPLRF            QEVFVDPSRDESLIFELLDFKHDV DNGSAVWFLQDLATEQDAEGS+VIEQSGVIEAPGLCY N
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        IPSVVTTAVGQM                          AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILI
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

XP_023552843.1 probable ran guanine nucleotide release factor [Cucurbita pepo subsp. pepo]

2.2e-60

74.86

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        M EDFSSE ALFGGAIVSTFP+RF            QEVFVDPSRDESLIFELLDFKHDV DNGSAVWFLQDLATEQDAEGS+VIEQSGVIEAPGLCY N
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        IPSVVTTAVGQM                          AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILI
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KU01 Uncharacterized protein

2.6e-59

73.74

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        M  DFS+E ALFGGAIVSTFPLRF            QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGS+VIEQSGVIEAP LCYGN
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        IPSV TTAVGQM                          AISKGRQGREAQNIVRVYLANLRLKGVGTDVLI AYEPI+I
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

A0A1S3BEU3 probable ran guanine nucleotide release factor

9.0e-60

73.74

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        M  DFS+E  LFGGAIVSTFPLRF            QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        IP+V TTAVGQM                          AISKGRQGREAQNIVRVYLANLRLKGVGTDVLI AYEPI+I
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

A0A6J1DAG6 probable ran guanine nucleotide release factor

2.8e-61

74.86

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        MPEDFSSE  LFGGAIVSTFPLRF            QEVFVDPSRDESLIFELLDFKHDVGD+GSAVWFLQDLA+EQDAEG+MVIEQSGVIEAPGLC+GN
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        I SVVTTAVGQM                          AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

A0A6J1GZ86 probable ran guanine nucleotide release factor

3.1e-60

74.3

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        M EDFSSE ALFGGAIVSTFP+RF            QEVFVDPSRDESLIFELLDFKHDV DNGSAVWFLQDLATEQDAEGS+VIEQSGVIE PGLCY N
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        IPSVVTTAVGQM                          AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILI
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

A0A6J1JJW2 probable ran guanine nucleotide release factor

6.2e-61

75.42

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        M EDFSSE ALFGGAIVSTFPLRF            QEVFVDPSRDESLIFELLDFKHDV DNGSAVWFLQDLATEQDAEGS+VIEQSGVIEAPGLCY N
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        IPSVVTTAVGQM                          AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILI
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G69680.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

1.5e-46

58.66

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Query:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN
        M  +  S   LFGGAI + FP RF            QEVFVDPSRDESLIFELLDFK +VGD GSA WFL DLA+EQDAEG  +IEQS VIEAPGL + N
Subjt:  MPEDFSSEHALFGGAIVSTFPLRF------------QEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGN

Query:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI
        I +V TTA+G+M                          AISKGRQGREAQN+VRVY+AN+RLKGV TDVL+ AYEPILI
Subjt:  IPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILI

Sequences

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CDS sequence

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ATGGATGAGACGCAATCTCCTTCCTCGCAAAATCACTCCTCCGTGCCTGACATTCAGTTGCAAGAAGGAGATGAGAGATTAGACTCATTGAAGAGAATTTGGGTTTTGAT
TAAAATGCCGGAAGATTTCTCTTCAGAGCATGCTCTGTTCGGGGGCGCTATTGTTAGTACATTCCCTCTTAGGTTCCAGGAAGTGTTTGTGGATCCATCTCGGGATGAAA
GCTTGATCTTTGAGCTTTTAGATTTTAAGCACGATGTTGGAGACAATGGAAGTGCTGTTTGGTTTCTTCAAGACCTTGCCACTGAGCAGGATGCAGAGGGAAGCATGGTA
ATTGAGCAATCTGGAGTGATCGAGGCACCTGGATTGTGTTATGGAAATATACCTTCTGTCGTAACAACTGCAGTTGGCCAAATGGTATGTGTTGCTGCTGTGTGCAAATT
GTCTTTCTTTGTCATGCTCGAGGTTATGCCAGCATTACTAGTCATTCTCATTGCAATTTCAAAGGGCCGGCAAGGAAGAGAAGCTCAAAATATTGTCAGGGTTTACCTGG
CGAATCTACGTCTTAAAGGAGTTGGTACAGATGTGCTGATCTGTGCATATGAACCCATTCTTATAAAGTGA

mRNA sequence

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Protein sequence

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MDETQSPSSQNHSSVPDIQLQEGDERLDSLKRIWVLIKMPEDFSSEHALFGGAIVSTFPLRFQEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMV
IEQSGVIEAPGLCYGNIPSVVTTAVGQMVCVAAVCKLSFFVMLEVMPALLVILIAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILIK

Spg025827 (gene) of Sponge gourd (cylindrica) v1 genome