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Spg025862 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg025862
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscription factor PRE6-like
Genome locationscaffold7:2317811..2319254
RNA-Seq ExpressionSpg025862
SyntenySpg025862
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]2.3e-3695.79Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_008446331.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]5.1e-3694.74Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]6.0e-3795.79Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]3.3e-3592.63Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS+VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]7.1e-3897.89Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator1.1e-3695.79Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A1S3BFH5 transcription factor PRE6-like2.4e-3694.74Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1DAM4 transcription factor PRE6-like2.9e-3795.79Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1G268 transcription factor PRE6-like2.1e-3592.63Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS+VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1HXN1 transcription factor PRE6-like1.6e-3592.63Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+RSSRSRRS+VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI66.0e-2469.47Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+R SRSR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Q0DUR2 Transcription factor ILI66.0e-2469.47Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+R SRSR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Q8GW32 Transcription factor PRE69.9e-2777.42Show/hide
Query:  STRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S RSSRSR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Subjt:  STRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Q9CA64 Transcription factor PRE37.9e-2469.15Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        MS R SRSR+S+  SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Q9LXG5 Transcription factor PRE27.1e-2570Show/hide
Query:  SSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        SSR  R A  S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSL+
Subjt:  SSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.1e-2877.42Show/hide
Query:  STRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S RSSRSR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Subjt:  STRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 15.6e-2569.15Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        MS R SRSR+S+  SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein4.7e-2466.32Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS R  RSR+++  SR ISDDQ+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR L REVD+LSDRLS+LL S D +S +AA+IRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

AT5G15160.1 BANQUO 25.1e-2670Show/hide
Query:  SSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        SSR  R A  S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSL+
Subjt:  SSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-2262.11Show/hide
Query:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS R SR   SA     ISD+Q+ DL+SKL+Q++PEI   R S + SASKVLQETCNYIR+L REVD+LS+RLS+LL S D +S +AA+IRSLLM
Subjt:  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGAT
TCGCAATGGCCGTTCCTCCTCCAGGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTAT
CAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGAT
TCGCAATGGCCGTTCCTCCTCCAGGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTAT
CAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA
Protein sequenceShow/hide protein sequence
MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM