CuGenDBv2

Gene ID	Spg025901
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ubiquitin
Genome location	scaffold7:1507236..1509402
RNA-Seq Expression	Spg025901
Synteny	Spg025901
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0019941 - modification-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0031386 - protein tag (molecular function) GO:0031625 - ubiquitin protein ligase binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR002906 - Ribosomal protein S27a IPR011332 - Zinc-binding ribosomal protein IPR038582 - S27a-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KDP26615.1 hypothetical protein JCGZ_17773 [Jatropha curcas]

3.2e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

NP_001269170.1 ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus]

3.2e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

PHT59822.1 Ubiquitin-40S ribosomal protein S27a [Capsicum baccatum]

3.2e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

XP_011082406.1 ubiquitin-40S ribosomal protein S27a [Sesamum indicum]

3.2e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

XP_016554632.1 PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Capsicum annuum]

3.2e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

TrEMBL top hits

e value

%identity

Alignment

A0A2G9I467 Ubiquitin

1.5e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

A0A4D9ASK9 Ubiquitin

1.5e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

A0A6J1GXP3 Ubiquitin

1.5e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

A0A6J1HTL0 Ubiquitin

1.5e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

I2AWM7 Ubiquitin

1.5e-27

100

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

SwissProt top hits

e value

%identity

Alignment

P47905 Ubiquitin-40S ribosomal protein S27a

2.8e-26

94.64

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA
        VKLAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVY KA
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA

P59232 Ubiquitin-40S ribosomal protein S27a-2

1.8e-25

91.23

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG
        VKLAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG

P59233 Ubiquitin-40S ribosomal protein S27a-3

2.3e-25

89.47

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG
        VKLAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG

P62980 Ubiquitin-40S ribosomal protein S27a

9.2e-30

98.31

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

P62981 Ubiquitin-40S ribosomal protein S27a

9.2e-30

98.31

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
        VKLAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

Arabidopsis top hits

e value

%identity

Alignment

AT1G23410.1 Ribosomal protein S27a / Ubiquitin family protein

1.3e-23

82.14

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA
        VKLAVLQFYKVD SGKVQRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV+ KA
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA

AT2G47110.1 ubiquitin 6

1.3e-26

91.23

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG
        VKLAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG

AT2G47110.2 ubiquitin 6

1.3e-26

91.23

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG
        VKLAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG

AT3G62250.1 ubiquitin 5

1.7e-26

89.47

Show/hide

Query:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG
        VKLAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Subjt:  VKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAACCCATCGGAATGCTGCGACTACCGTGGGACTCGAATCGAGTTTCGATTTGGAGATTCTGGGAAGCGGTCTTTTGTCCGGCGGTTTCGACAATCAGGCGAGGGTT
TGGGCTTTTTGTTCTTGGATTTGGTGGTTTCAACAATGTCTTTGAGGCTATGAACGCCCTTCCGACAACTGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACT
CTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGCGCTGGAACTTTCATGGCCAACCACTTTGATCGCCACTACTGTGGAAAGTGTGGTCTGACT
TATGTTTACAACAAAGCTGGTGGGGATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEPIGMLRLPWDSNRVSIWRFWEAVFCPAVSTIRRGFGLFVLGFGGFNNVFEAMNALPTTVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT
YVYNKAGGD

Spg025901 (gene) of Sponge gourd (cylindrica) v1 genome