CuGenDBv2

Gene ID	Spg025990
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	AD domain-containing protein
Genome location	scaffold7:1797136..1800194
RNA-Seq Expression	Spg025990
Synteny	Spg025990
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0030198 - extracellular matrix organization (biological process) GO:0030574 - collagen catabolic process (biological process) GO:0031012 - extracellular matrix (cellular component) GO:0004222 - metalloendopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR019181 - Anticodon-binding domain IPR039683 - Protein Lsm12-like

Homology

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GenBank top hits

e value

%identity

Alignment

KGN52415.2 hypothetical protein Csa_008581 [Cucumis sativus]

3.5e-52

85.71

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                 PRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

TYK15583.1 protein LSM12-like protein A [Cucumis melo var. makuwa]

3.5e-52

85.71

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                 PRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

XP_004135229.1 protein LSM12 homolog A [Cucumis sativus]

1.9e-53

87.97

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           PRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

XP_022151106.1 protein LSM12 homolog [Momordica charantia]

1.6e-52

86.47

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           P RNIRLLKANYIKEF+FLGHGEDPLDLKKCYLDLN+LRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

XP_038892233.1 protein LSM12 homolog A-like [Benincasa hispida]

1.9e-53

87.97

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           PRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQA9 AD domain-containing protein

9.1e-54

87.97

Show/hide

Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           PRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

A0A1S3BGE7 protein LSM12 homolog A

5.0e-52

79.45

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVL--HILSGFLTSFNH-----------YHCPRRNIRLLKANYIKEFSFLGHGEDPLDL
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL        G + +F+               PRRNIRLLKANYIKEFSFLGHGEDPLDL
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVL--HILSGFLTSFNH-----------YHCPRRNIRLLKANYIKEFSFLGHGEDPLDL

Query:  KKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        K CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  KKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

A0A5A7SWT7 Protein LSM12-like protein A

1.7e-52

85.71

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                 PRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

A0A5D3CUL6 Protein LSM12-like protein A

1.7e-52

85.71

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                 PRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

A0A6J1DDK3 protein LSM12 homolog

7.7e-53

86.47

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Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR
        MALDGSGNGDDF VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           P RNIRLLKANYIKEF+FLGHGEDPLDLKKCYLDLN+LRAR
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAR

Query:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
Subjt:  EELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

SwissProt top hits

e value

%identity

Alignment

Q5ZML5 Protein LSM12 homolog

2.2e-04

29.37

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Query:  GDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQ
        G+ F+VGS  S +T      QG+V+ FD PS +L L   S   +S    H    +I L+   Y+ E   +    E P  L    L+++ L  +  +   +
Subjt:  GDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQ

Query:  AEAEAERIGVGVTSEAQSIFDALSKT
          ++A  I  GV+ E Q +F  + KT
Subjt:  AEAEAERIGVGVTSEAQSIFDALSKT

Q6GP89 Protein LSM12 homolog

2.6e-05

27.91

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Query:  SGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELA
        +G G+ F +G++ S +T      QG+V+ FD PS +L L   S      NH      +I LL  +Y+ +   +    + P  L    L++  L +R  L 
Subjt:  SGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELA

Query:  IRQAEAEAERIGVGVTSEAQSIFDALSKT
          +  ++A  I  GV+ + Q +F  + KT
Subjt:  IRQAEAEAERIGVGVTSEAQSIFDALSKT

Q6NSN1 Protein LSM12 homolog B

9.8e-05

29.69

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Query:  GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFL-GHGEDPLDLKKCYLDLNTLRAREELAI
        G G+ F+VGS  S  T LG   QG+V+ FD PS +L L          +       ++ L+   Y+ E   +    E P  L     +    RAR E   
Subjt:  GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFL-GHGEDPLDLKKCYLDLNTLRAREELAI

Query:  RQAEAEAERIGVGVTSEAQSIFDALSKT
        + + A A  +  GV+ E Q +F  + KT
Subjt:  RQAEAEAERIGVGVTSEAQSIFDALSKT

Q6P833 Protein LSM12 homolog

3.4e-05

27.91

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Query:  SGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELA
        +G G+ F +G++ S +T      QG+V+ FD PS +L L   S   +S    H    +I LL  +Y+ +   +    + P  L    L++  L +R  L 
Subjt:  SGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELA

Query:  IRQAEAEAERIGVGVTSEAQSIFDALSKT
          +  ++A  I  GV+ + Q +F  + KT
Subjt:  IRQAEAEAERIGVGVTSEAQSIFDALSKT

Q6PBA2 Protein LSM12 homolog A

6.8e-06

30.37

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Query:  GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPR-------RNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLR
        G G+ F+VGS  S  T LG   QG+V+ FD PS +L L              CP         ++ L+   Y+ E   +    E P  L    +     R
Subjt:  GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPR-------RNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLR

Query:  AREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        AR E   + ++A A  I  GV+ E Q +F  + KT
Subjt:  AREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

Arabidopsis top hits

e value

%identity

Alignment

AT1G24050.1 RNA-processing, Lsm domain

4.6e-26

48.89

Show/hide

Query:  AKMALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLR
        A +A    G G+ F VG+ +S+K   GDEF+G V+ +D   N +      G      H     +N R++ A++I   S+LG  EDPLD     +DLN LR
Subjt:  AKMALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLR

Query:  AREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
        A+E LAIRQAEA+AER+GVGVT+EAQSIFDALSKT
Subjt:  AREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

AT1G70220.1 RNA-processing, Lsm domain

3.2e-11

30.91

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Query:  LDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SGFLTSFNHYH---------CPR--------------------RNIRLLK
        +D  G  + F VG  +++K T GD+F G V+ +D   N  V  IL     S  + S+  Y          C R                    +++R++ 
Subjt:  LDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SGFLTSFNHYH---------CPR--------------------RNIRLLK

Query:  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT
         NYI E   LG  ++ L  K   ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKT
Subjt:  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

Sequences

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CDS sequence

Show/hide CDS sequence

GAGGAGGAAGCGAAGGTTCCAACTTTTACAGCGAGGAAGAAGGCGAAAATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAA
GACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAACTTCGTTTAATCATTATC
ACTGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTC
AACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATC
TAAAACGTAA

mRNA sequence

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Protein sequence

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EEEAKVPTFTARKKAKMALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDL
NTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

Spg025990 (gene) of Sponge gourd (cylindrica) v1 genome