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Spg026022 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026022
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:1640009..1641612
RNA-Seq ExpressionSpg026022
SyntenySpg026022
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.5e-1644.9Show/hide
Query:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEEDEDFTEL
        QWKP     WKLN  A+W  +T  GG+GW+LRD KG +  A  + I     I +LE MAICEGLRA+  +   P+ +ESDSL+ + L++ + +D TE+
Subjt:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEEDEDFTEL
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.7e-1343.82Show/hide
Query:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLIN
        +WKP     WKLN  A+W  +T   G+GW+LRD KG +   G + I     I +LE MAICEGLRA+  +   P+ +ESDSL+ + L++
Subjt:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLIN
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.7e-1343.82Show/hide
Query:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLIN
        +WKP     WKLN  A+W  +T   G+GW+LRD KG +   G + I     I +LE MAICEGLRA+  +   P+ +ESDSL+ + L++
Subjt:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLIN
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-1333.8Show/hide
Query:  QKSKSEILYQQIDKSIDELVDKEGTHLRLTNQQRSCIIVSPITPQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLE
        + S    + QQ+ K + E   +  T L + ++  +  +      +W+P P  +W LN  ASW+  T RGG+GW++R W G I +AG + +E    +  LE
Subjt:  QKSKSEILYQQIDKSIDELVDKEGTHLRLTNQQRSCIIVSPITPQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLE

Query:  SMAICEGLRALLS-DPPYPMCVESDSLQVVRLINEEDEDFTE
        + AI EGLR L +     P+ +E+DS +V  L+N + ED T+
Subjt:  SMAICEGLRALLS-DPPYPMCVESDSLQVVRLINEEDEDFTE
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.7e-1341.51Show/hide
Query:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPM----C----VESDSLQVVRLINEED
        +WKP     WKLN  A+W  +T  GG+GW+LRD KG +  A  + I     I +LE MAICEGLRA+  +   P+    C    +ESDSL+ + L++ + 
Subjt:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPM----C----VESDSLQVVRLINEED

Query:  EDFTEL
        +D TE+
Subjt:  EDFTEL
TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.2e-1644.9Show/hide
Query:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEEDEDFTEL
        QWKP     WKLN  A+W  +T  GG+GW+LRD KG +  A  + I     I +LE MAICEGLRA+  +   P+ +ESDSL+ + L++ + +D TE+
Subjt:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEEDEDFTEL
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.3e-1343.82Show/hide
Query:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLIN
        +WKP     WKLN  A+W  +T   G+GW+LRD KG +   G + I     I +LE MAICEGLRA+  +   P+ +ESDSL+ + L++
Subjt:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLIN
A0A6J1DNV9 uncharacterized protein LOC1110224035.9e-1433.8Show/hide
Query:  QKSKSEILYQQIDKSIDELVDKEGTHLRLTNQQRSCIIVSPITPQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLE
        + S    + QQ+ K + E   +  T L + ++  +  +      +W+P P  +W LN  ASW+  T RGG+GW++R W G I +AG + +E    +  LE
Subjt:  QKSKSEILYQQIDKSIDELVDKEGTHLRLTNQQRSCIIVSPITPQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLE

Query:  SMAICEGLRALLS-DPPYPMCVESDSLQVVRLINEEDEDFTE
        + AI EGLR L +     P+ +E+DS +V  L+N + ED T+
Subjt:  SMAICEGLRALLS-DPPYPMCVESDSLQVVRLINEEDEDFTE
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.3e-1343.82Show/hide
Query:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLIN
        +WKP     WKLN  A+W  +T   G+GW+LRD KG +   G + I     I +LE MAICEGLRA+  +   P+ +ESDSL+ + L++
Subjt:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLIN
A0A6J1DSV1 uncharacterized protein LOC1110236081.3e-1341.51Show/hide
Query:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPM----C----VESDSLQVVRLINEED
        +WKP     WKLN  A+W  +T  GG+GW+LRD KG +  A  + I     I +LE MAICEGLRA+  +   P+    C    +ESDSL+ + L++ + 
Subjt:  QWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGWKIPWLESMAICEGLRALLSDPPYPM----C----VESDSLQVVRLINEED

Query:  EDFTEL
        +D TE+
Subjt:  EDFTEL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.4e-0623.24Show/hide
Query:  KSKSEILYQQIDKSIDELV-------DKEGTHLRLTNQQRSCIIVSPITPQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGW
        KS++E++++  +    E++       ++  T   L  +     +   ++ QWK  P    K N  A+W  E  R G+GW+LR+  G +   G +++ R  
Subjt:  KSKSEILYQQIDKSIDELV-------DKEGTHLRLTNQQRSCIIVSPITPQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGW

Query:  KIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEED
         +   E  A+   +  +       +  ESD+  +V L+N +D
Subjt:  KIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEED
AT4G29090.1 Ribonuclease H-like superfamily protein3.1e-0722.54Show/hide
Query:  KSKSEILYQQIDKSIDELVDKEGTHL---RLTNQQRSCIIVSPIT----PQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGW
        K+++E++++  + +  E++ +    L   R+  +  SC     +      +W+P P    K N  A+WN++  R G+GW+LR+ KG ++  G +++ +  
Subjt:  KSKSEILYQQIDKSIDELVDKEGTHL---RLTNQQRSCIIVSPIT----PQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGW

Query:  KIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEED
         +   E  A+   + +L       +  ESDS  ++ ++N ++
Subjt:  KIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEED

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACTCACCACCTTGGTGTACAAGGAAGAACAAAGACACGACAAACAGAAGTCCAAATCAGAAATTTTGTACCAGCAGATTGACAAATCTATAGATGAGCTCGTGGA
CAAAGAAGGCACGCATCTTAGATTGACGAACCAACAACGGTCCTGCATCATTGTTAGCCCGATTACTCCTCAGTGGAAGCCAATCCCAGAAGGCGTCTGGAAGCTGAATT
GCGGCGCCAGTTGGAACAAAGAGACGCTGCGAGGTGGGGTAGGATGGCTGCTACGCGACTGGAAAGGCACGATTCAAATGGCGGGTTATAAATCTATCGAGCGTGGCTGG
AAAATTCCTTGGTTGGAGTCGATGGCGATTTGTGAAGGGTTGCGGGCGCTTCTCTCGGATCCTCCTTACCCGATGTGCGTCGAGAGTGACTCCTTACAAGTGGTACGCCT
GATAAATGAAGAAGATGAGGATTTTACTGAACTGGCTCTTTTCATTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACTCACCACCTTGGTGTACAAGGAAGAACAAAGACACGACAAACAGAAGTCCAAATCAGAAATTTTGTACCAGCAGATTGACAAATCTATAGATGAGCTCGTGGA
CAAAGAAGGCACGCATCTTAGATTGACGAACCAACAACGGTCCTGCATCATTGTTAGCCCGATTACTCCTCAGTGGAAGCCAATCCCAGAAGGCGTCTGGAAGCTGAATT
GCGGCGCCAGTTGGAACAAAGAGACGCTGCGAGGTGGGGTAGGATGGCTGCTACGCGACTGGAAAGGCACGATTCAAATGGCGGGTTATAAATCTATCGAGCGTGGCTGG
AAAATTCCTTGGTTGGAGTCGATGGCGATTTGTGAAGGGTTGCGGGCGCTTCTCTCGGATCCTCCTTACCCGATGTGCGTCGAGAGTGACTCCTTACAAGTGGTACGCCT
GATAAATGAAGAAGATGAGGATTTTACTGAACTGGCTCTTTTCATTAAATAA
Protein sequenceShow/hide protein sequence
MKLTTLVYKEEQRHDKQKSKSEILYQQIDKSIDELVDKEGTHLRLTNQQRSCIIVSPITPQWKPIPEGVWKLNCGASWNKETLRGGVGWLLRDWKGTIQMAGYKSIERGW
KIPWLESMAICEGLRALLSDPPYPMCVESDSLQVVRLINEEDEDFTELALFIK