CuGenDBv2

Gene ID	Spg026081
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	GC-rich sequence DNA-binding factor 1-like protein
Genome location	scaffold7:3643170..3643968
RNA-Seq Expression	Spg026081
Synteny	Spg026081
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR012890 - Intron Large complex component GCFC2-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008446554.1 PREDICTED: PAX3- and PAX7-binding protein 1 [Cucumis melo]

1.7e-48

53.75

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Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEPN  P    +    +SKPSSTSS VA KPKKANP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------
                             QPQAG YTKEALRELQKNTRTLASSRPSSESKPS EPVIVLKGLLKP EQ+PE+ARE KESSSED+ + +         
Subjt:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------

Query:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                     G  + KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

XP_011655758.1 transcriptional repressor ILP1 [Cucumis sativus]

1.1e-47

53.36

Show/hide

Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEP        +    +SKPSSTSS VA KPKKANP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------
                             QPQAG YTKEALRELQKNTRTLASSRPSSESKPS EPVIVLKGLLKP EQ+P++AREAKESSSEDD + +         
Subjt:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------

Query:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                     G  + KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

XP_022150575.1 transcriptional repressor ILP1 [Momordica charantia]

1.1e-47

55.16

Show/hide

Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEPN       +    +SKP   SSTVANKPKK NP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  --------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDD-GSSNGFNGDCQR-
                            QPQAGTYTKEALRELQKNTRTLASSRPSSESKPS+EPVIVLKGLLKP EQIPEN+REAKESSSED+ G  NG      R 
Subjt:  --------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDD-GSSNGFNGDCQR-

Query:  -----------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                         KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -----------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

XP_023542827.1 transcriptional repressor ILP1 [Cucurbita pepo subsp. pepo]

1.8e-45

53.57

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Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEPN      +     +SK +STSSTVANKPKKANP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  --------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDD--GSSNGFNGDCQR
                            QPQAGTYTKEALRELQKNTRTLASSR SSESKPS EPVIVLKGLLKPVEQI ++A+E KESSSED+  GS+    G  +R
Subjt:  --------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDD--GSSNGFNGDCQR

Query:  -----------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                         KDS+G SIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -----------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

XP_038892418.1 transcriptional repressor ILP1 [Benincasa hispida]

4.5e-49

56.47

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Query:  MSGSRARNFRRRADDNDDDDEPN--APPLLQSAFQRLTSKPSSTSSTVANKPKKANP-------------------------------------------
        MSGSRARNFRRRADDNDDDDEPN  A P   SA    +SKPSSTSS VANKPKKANP                                           
Subjt:  MSGSRARNFRRRADDNDDDDEPN--APPLLQSAFQRLTSKPSSTSSTVANKPKKANP-------------------------------------------

Query:  -----------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSED-DGSSNGFNGDC
                               QPQAGTYTKEALRELQKNTRTLASSRPSSESKPS EPVIVLKGLLKP EQIP++AREAKES+SED +G SN  +   
Subjt:  -----------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSED-DGSSNGFNGDC

Query:  QR------------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
         R                  KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  QR------------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWD3 GCFC domain-containing protein

5.4e-48

53.36

Show/hide

Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEP        +    +SKPSSTSS VA KPKKANP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------
                             QPQAG YTKEALRELQKNTRTLASSRPSSESKPS EPVIVLKGLLKP EQ+P++AREAKESSSEDD + +         
Subjt:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------

Query:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                     G  + KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

A0A1S3BG51 PAX3- and PAX7-binding protein 1

8.3e-49

53.75

Show/hide

Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEPN  P    +    +SKPSSTSS VA KPKKANP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------
                             QPQAG YTKEALRELQKNTRTLASSRPSSESKPS EPVIVLKGLLKP EQ+PE+ARE KESSSED+ + +         
Subjt:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------

Query:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                     G  + KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

A0A5D3CCM3 PAX3-and PAX7-binding protein 1

8.3e-49

53.75

Show/hide

Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEPN  P    +    +SKPSSTSS VA KPKKANP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------
                             QPQAG YTKEALRELQKNTRTLASSRPSSESKPS EPVIVLKGLLKP EQ+PE+ARE KESSSED+ + +         
Subjt:  ---------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDDGSSNGFN------

Query:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                     G  + KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -------------GDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

A0A6J1D8U8 transcriptional repressor ILP1

5.4e-48

55.16

Show/hide

Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEPN       +    +SKP   SSTVANKPKK NP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  --------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDD-GSSNGFNGDCQR-
                            QPQAGTYTKEALRELQKNTRTLASSRPSSESKPS+EPVIVLKGLLKP EQIPEN+REAKESSSED+ G  NG      R 
Subjt:  --------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDD-GSSNGFNGDCQR-

Query:  -----------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                         KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -----------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

A0A6J1G0Q4 transcriptional repressor ILP1

8.6e-46

53.57

Show/hide

Query:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------
        MSGSRARNFRRRADDNDDDDEPN      +     +SK +STSSTVANKPKKANP                                             
Subjt:  MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANP---------------------------------------------

Query:  --------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDD--GSSNGFNGDCQR
                            QPQAGTYTKEALRELQKNTRTLASSR SSESKPS EPVIVLKGLLKPVEQI ++A+E KESSSED+  GS+    G  +R
Subjt:  --------------------QPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENAREAKESSSEDD--GSSNGFNGDCQR

Query:  -----------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI
                         KDS+G SIPDQATINAIRAKRERMRQAGVAAPDYI
Subjt:  -----------------KDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYI

SwissProt top hits

e value

%identity

Alignment

Q9FNN3 Transcriptional repressor ILP1

3.9e-11

37.13

Show/hide

Query:  DNDDDDEPNAPPLL-----------QSAFQRLTSKPSSTSSTVANKPKKANPQPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPV
        D+++++E  AP +             S+   ++      SST   +P  +N  PQAG+Y+KEAL ELQKNTRTL    P S S  + EP +VLKGL+KP 
Subjt:  DNDDDDEPNAPPLL-----------QSAFQRLTSKPSSTSSTVANKPKKANPQPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPV

Query:  EQIPENA-REAKESSSEDDGSSNGFNGDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVA-APDYI
        +   + + ++  +  S+ D    G       ++    +  DQA I  IRAK+ERMRQ+  A APDYI
Subjt:  EQIPENA-REAKESSSEDDGSSNGFNGDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVA-APDYI

Arabidopsis top hits

e value

%identity

Alignment

AT5G08550.1 GC-rich sequence DNA-binding factor-like protein

2.8e-12

37.13

Show/hide

Query:  DNDDDDEPNAPPLL-----------QSAFQRLTSKPSSTSSTVANKPKKANPQPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPV
        D+++++E  AP +             S+   ++      SST   +P  +N  PQAG+Y+KEAL ELQKNTRTL    P S S  + EP +VLKGL+KP 
Subjt:  DNDDDDEPNAPPLL-----------QSAFQRLTSKPSSTSSTVANKPKKANPQPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPV

Query:  EQIPENA-REAKESSSEDDGSSNGFNGDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVA-APDYI
        +   + + ++  +  S+ D    G       ++    +  DQA I  IRAK+ERMRQ+  A APDYI
Subjt:  EQIPENA-REAKESSSEDDGSSNGFNGDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVA-APDYI

Sequences

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CDS sequence

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atgtctggcagtcgagccagaaacttccgccgccgtgccgacgacaacgacgacgatgacgaacccaatgctccgccgctccttcaatcagcgttccaacgcctcacatc
aaaaccatcttccacttcgtcaaccgtcgccaataaacccaagaaggcaaatcctcagcctcaagctggaacttataccaaggaggccctccgcgagttgcagaagaata
ctcgcacgcttgcgagctcgagaccctcatctgaatctaagccttccaccgaacctgttattgttctaaagggtcttctcaaacccgtcgaacaaattccggaaaatgct
agagaagctaaagagtctagctccgaggatgacggaagctcgaatggcttcaatggggattgccagaggaaggattcatcggggtcgtcaattcccgatcaagcgaccat
taatgctattcgcgcgaaaagggaacgtatgcgacaggctggagttgcagcgccggattatatcgttagatgcaggaagcaaccggaccgcgcctggggagttgagcgat
ga

mRNA sequence

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Protein sequence

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MSGSRARNFRRRADDNDDDDEPNAPPLLQSAFQRLTSKPSSTSSTVANKPKKANPQPQAGTYTKEALRELQKNTRTLASSRPSSESKPSTEPVIVLKGLLKPVEQIPENA
REAKESSSEDDGSSNGFNGDCQRKDSSGSSIPDQATINAIRAKRERMRQAGVAAPDYIVRCRKQPDRAWGVER

Spg026081 (gene) of Sponge gourd (cylindrica) v1 genome