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Spg026097 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026097
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase subunit 10-like protein
Genome locationscaffold7:1522864..1523904
RNA-Seq ExpressionSpg026097
SyntenySpg026097
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]6.6e-2596.61Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        VIGNKWDTYL+LLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_008446194.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo]2.5e-2496.61Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        VIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_022151052.1 DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]1.5e-2496.61Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        VIGNKWD+YLELLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_027347186.1 DNA-directed RNA polymerase subunit 10-like protein [Abrus precatorius]1.8e-2291.23Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        VIGNKWDTYL+LLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKS+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]3.0e-2598.31Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

TrEMBL top hitse value%identityAlignment
A0A067GUJ6 Uncharacterized protein8.7e-2391.23Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        VIGNKWDTYL+LLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKS+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

A0A0A0KQ80 Uncharacterized protein3.2e-2596.61Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        VIGNKWDTYL+LLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein1.2e-2496.61Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        VIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein1.2e-2496.61Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        VIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A6J1DCG7 DNA-directed RNA polymerase subunit 10-like protein7.1e-2596.61Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        VIGNKWD+YLELLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

SwissProt top hitse value%identityAlignment
O13877 DNA-directed RNA polymerases I, II, and III subunit RPABC56.2e-1873.68Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        VIG+KWDTYL LLQ D  EGEALD LGL RYCCRRM++THVDLIEKLL YN + K +
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC54.2e-2282.46Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        VIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 109.3e-2282.46Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        VIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein1.2e-2491.23Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        VIGNKWDTYLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q9VC49 DNA-directed RNA polymerases I, II, and III subunit RPABC58.1e-1874.55Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        VIGNKW++YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit6.6e-2382.46Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        VIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

AT1G61700.1 RNA polymerases N / 8 kDa subunit8.3e-2691.23Show/hide
Query:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        VIGNKWDTYLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  VIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGTCGGAATCAGTTTCCGAATCCGAAGCCTCCAAATTGGCTTCAAATACGGTGGAACGGAAGCTCCAACTGAAAACGAAAACGAAATTGCAGAGCATCGAAGA
AGAAGATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTACTGATTCCGCCTCTTCATCGTCGATCGCCGTGATCGGTAACAAATGGGACACTTATCTTGAACTTC
TACAGGCCGACTATCCGGAAGGGGAGGCATTGGATATGTTAGGGCTAGTTCGATACTGCTGCCGGCGGATGCTTATGACTCATGTGGATCTCATAGAGAAGCTCTTGAAT
TACAACACCATGGATAAGTCTGAAATCGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAGTCGGAATCAGTTTCCGAATCCGAAGCCTCCAAATTGGCTTCAAATACGGTGGAACGGAAGCTCCAACTGAAAACGAAAACGAAATTGCAGAGCATCGAAGA
AGAAGATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTACTGATTCCGCCTCTTCATCGTCGATCGCCGTGATCGGTAACAAATGGGACACTTATCTTGAACTTC
TACAGGCCGACTATCCGGAAGGGGAGGCATTGGATATGTTAGGGCTAGTTCGATACTGCTGCCGGCGGATGCTTATGACTCATGTGGATCTCATAGAGAAGCTCTTGAAT
TACAACACCATGGATAAGTCTGAAATCGTGTAG
Protein sequenceShow/hide protein sequence
MAESESVSESEASKLASNTVERKLQLKTKTKLQSIEEEDDNSGALFHVRQGTDSASSSSIAVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLN
YNTMDKSEIV