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Spg026196 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026196
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:3420699..3421997
RNA-Seq ExpressionSpg026196
SyntenySpg026196
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABA94760.1 Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group]1.5e-1234.25Show/hide
Query:  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPN
        + +  +S+    GP    T  ++ HW  P  G  KLNV+ S D  + +GG+G I+RD+SGST+ A  K ++   +    E+RA +EGL     I A    
Subjt:  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPN

Query:  LDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKI
          + PI + +D + ++NLL   + D SE++ LV EI+RL++E  ++
Subjt:  LDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.9e-1237.01Show/hide
Query:  AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVD
        A W PP   +WKLN  A+     + GG+GWI+RD  G  I A  + I    ++  LE+ AI EGLR    IR  H      PI + SD++  I+LL+   
Subjt:  AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVD

Query:  SDQSEISFLVDEIERLIAEHEKIPFAH
         DQ+EI +L++EI +++ + E +   H
Subjt:  SDQSEISFLVDEIERLIAEHEKIPFAH

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.6e-1136.64Show/hide
Query:  TLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINL
        TL ++  W PPP   W LN +AS  +S  RGG+GWI+R   G  + AG + +    +VK+LE  AILEGLR L  +        + P+ + +D+  V +L
Subjt:  TLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINL

Query:  LNNVDSDQSEISFLVDEIERLIAEHEKIPFA
        LN    D ++  ++V+EI  L    E + FA
Subjt:  LNNVDSDQSEISFLVDEIERLIAEHEKIPFA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.2e-1135.11Show/hide
Query:  AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASH----PNLDIPPIEMVSDAIGVINLL
        A W PP   +WKLN +A+     + GG+GWI+RD  G  I A  + I    ++  LE+ AI EGLR    IR  H          PI + SD++  I+LL
Subjt:  AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASH----PNLDIPPIEMVSDAIGVINLL

Query:  NNVDSDQSEISFLVDEIERLIAEHEKIPFAH
        +    DQ+EI +L++EI +++ + + +   H
Subjt:  NNVDSDQSEISFLVDEIERLIAEHEKIPFAH

XP_025877173.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group]1.5e-1234.25Show/hide
Query:  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPN
        + +  +S+    GP    T  ++ HW  P  G  KLNV+ S D  + +GG+G I+RD+SGST+ A  K ++   +    E+RA +EGL     I A    
Subjt:  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPN

Query:  LDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKI
          + PI + +D + ++NLL   + D SE++ LV EI+RL++E  ++
Subjt:  LDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.2e-1337.01Show/hide
Query:  AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVD
        A W PP   +WKLN  A+     + GG+GWI+RD  G  I A  + I    ++  LE+ AI EGLR    IR  H      PI + SD++  I+LL+   
Subjt:  AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVD

Query:  SDQSEISFLVDEIERLIAEHEKIPFAH
         DQ+EI +L++EI +++ + E +   H
Subjt:  SDQSEISFLVDEIERLIAEHEKIPFAH

A0A6J1DNV9 uncharacterized protein LOC1110224037.8e-1236.64Show/hide
Query:  TLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINL
        TL ++  W PPP   W LN +AS  +S  RGG+GWI+R   G  + AG + +    +VK+LE  AILEGLR L  +        + P+ + +D+  V +L
Subjt:  TLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINL

Query:  LNNVDSDQSEISFLVDEIERLIAEHEKIPFA
        LN    D ++  ++V+EI  L    E + FA
Subjt:  LNNVDSDQSEISFLVDEIERLIAEHEKIPFA

A0A6J1DSV1 uncharacterized protein LOC1110236086.0e-1235.11Show/hide
Query:  AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASH----PNLDIPPIEMVSDAIGVINLL
        A W PP   +WKLN +A+     + GG+GWI+RD  G  I A  + I    ++  LE+ AI EGLR    IR  H          PI + SD++  I+LL
Subjt:  AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASH----PNLDIPPIEMVSDAIGVINLL

Query:  NNVDSDQSEISFLVDEIERLIAEHEKIPFAH
        +    DQ+EI +L++EI +++ + + +   H
Subjt:  NNVDSDQSEISFLVDEIERLIAEHEKIPFAH

B8AFN2 RNase H domain-containing protein1.0e-1136.89Show/hide
Query:  HWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDS
        HW+ P  G  KLNV+ S D +  +GG+G ++RDSSG+TI A  K +N        E+RA +EGL  +        +  + PI + +D + V+ LLN+ + 
Subjt:  HWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDS

Query:  DQSEISFLVDEIERLIAEHEKI
        D+SE++ +V E +RL+A   +I
Subjt:  DQSEISFLVDEIERLIAEHEKI

Q2R147 Protein kinase domain containing protein, expressed7.1e-1334.25Show/hide
Query:  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPN
        + +  +S+    GP    T  ++ HW  P  G  KLNV+ S D  + +GG+G I+RD+SGST+ A  K ++   +    E+RA +EGL     I A    
Subjt:  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPN

Query:  LDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKI
          + PI + +D + ++NLL   + D SE++ LV EI+RL++E  ++
Subjt:  LDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.9e-0628.17Show/hide
Query:  ALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVS
        A GP     L  Q  W  PP    K N +A+      R G+GWI+R+ SG  +  G + +    +V    + A LE LR      +     +   I   S
Subjt:  ALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVS

Query:  DAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKIPFAHSP
        DA  ++NLLN+ D     +   +++I++L+   E++ F  +P
Subjt:  DAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKIPFAHSP

AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-0523.66Show/hide
Query:  SQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNN
        S   W PPP    K N +A+ +    R G+GW++R+  G     G + +    SV   E+ A+   +  L   + ++       +   SD+  +I +LNN
Subjt:  SQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNN

Query:  VDSDQSEISFLVDEIERLIAEHEKIPFAHSP
         D     +   + +++RL+++  ++ F   P
Subjt:  VDSDQSEISFLVDEIERLIAEHEKIPFAHSP

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.8e-0425.37Show/hide
Query:  NTLPSQ-AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIG-V
        N  PS+   W PP     K N +AS  E  +  G+GWI+R+S G+ I  G+ +          + R   E   C   I A   +      +++ +     
Subjt:  NTLPSQ-AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIG-V

Query:  INLLNNVDSDQSEISFLVDEIERLIAEHEKIPFA
        I  + N  S    +   +D I+  I   E I F+
Subjt:  INLLNNVDSDQSEISFLVDEIERLIAEHEKIPFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATGTCGCGACGCTGTCTTCCACACCGCCAGAACACATAAGGAAATTGTCACAGCGTCGAGACGCTAAGGGACAGCGTCGAGACGTTGTCTCTGCTGTCGCCCA
AAACAGAATAGGAAGAGGGCATATAGGCACAACAATTAGTTCTAGTAAAGGGTGGTGGAAGTTCACAGGGTTCTATGGTAACCCCGATCCATCTAAGCATAATGAGTCCT
GGGATCTCTTAAACAGGATCAGGAAGATTTACCTCAGTTCTGAAGCAGCTTTAGGGCCTTCAAGAGCGAATACCCTACCGAGTCAAGCCCACTGGATCCCTCCACCTCCT
GGTACATGGAAGCTCAATGTGGAAGCCTCTCGTGATGAATCCCAAAGCAGAGGAGGGGTGGGTTGGATCATGCGTGACTCTTCAGGTTCTACTATCTGTGCAGGCCTAAA
AAGAATCAACGACAATTGGTCAGTGAAGATGCTTGAGATGAGAGCGATCCTCGAAGGGTTGAGATGCTTACCGACCATCAGGGCTTCGCACCCAAATCTGGACATTCCGC
CTATCGAGATGGTTTCTGACGCCATTGGCGTGATCAATCTACTTAATAATGTAGACTCAGACCAATCGGAGATCTCCTTTTTGGTCGATGAAATTGAGCGCCTGATTGCC
GAGCATGAGAAAATCCCTTTTGCTCACAGCCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAATGTCGCGACGCTGTCTTCCACACCGCCAGAACACATAAGGAAATTGTCACAGCGTCGAGACGCTAAGGGACAGCGTCGAGACGTTGTCTCTGCTGTCGCCCA
AAACAGAATAGGAAGAGGGCATATAGGCACAACAATTAGTTCTAGTAAAGGGTGGTGGAAGTTCACAGGGTTCTATGGTAACCCCGATCCATCTAAGCATAATGAGTCCT
GGGATCTCTTAAACAGGATCAGGAAGATTTACCTCAGTTCTGAAGCAGCTTTAGGGCCTTCAAGAGCGAATACCCTACCGAGTCAAGCCCACTGGATCCCTCCACCTCCT
GGTACATGGAAGCTCAATGTGGAAGCCTCTCGTGATGAATCCCAAAGCAGAGGAGGGGTGGGTTGGATCATGCGTGACTCTTCAGGTTCTACTATCTGTGCAGGCCTAAA
AAGAATCAACGACAATTGGTCAGTGAAGATGCTTGAGATGAGAGCGATCCTCGAAGGGTTGAGATGCTTACCGACCATCAGGGCTTCGCACCCAAATCTGGACATTCCGC
CTATCGAGATGGTTTCTGACGCCATTGGCGTGATCAATCTACTTAATAATGTAGACTCAGACCAATCGGAGATCTCCTTTTTGGTCGATGAAATTGAGCGCCTGATTGCC
GAGCATGAGAAAATCCCTTTTGCTCACAGCCCATGA
Protein sequenceShow/hide protein sequence
MDNVATLSSTPPEHIRKLSQRRDAKGQRRDVVSAVAQNRIGRGHIGTTISSSKGWWKFTGFYGNPDPSKHNESWDLLNRIRKIYLSSEAALGPSRANTLPSQAHWIPPPP
GTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIA
EHEKIPFAHSP