CuGenDBv2

Gene ID	Spg026207
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RRM domain-containing protein
Genome location	scaffold7:2135673..2137044
RNA-Seq Expression	Spg026207
Synteny	Spg026207
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022151094.1 uncharacterized protein At1g27050 [Momordica charantia]

9.2e-93

89.69

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MSRKRDKPYPS HV TSV+KRRRPLPPV S  EDDD+DKP+PKPAPPPALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGRGN+LASTIVNPR+SD SSR DVPFR REV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

XP_022957251.1 uncharacterized protein At1g27050 [Cucurbita moschata]

5.0e-91

89.69

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Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP     EDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD PFRGREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

1.0e-91

90.21

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD PFRGREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

XP_023537967.1 uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]

2.3e-91

89.69

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Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLAST+VNPR+S+SSSRSD PFRGREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

6.4e-94

92.27

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Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H+ TSVAKRRRP PP  S  ED+DMDKPL KPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRS+SSSRSDVPFRGREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

5.6e-88

88.14

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H+ TS AKRRRP P    S  DDD++KP+ KPAPP ALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVNPRRS+SSSRSDVPFRGREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

A0A5D3CUC0 Thaumatin-like protein 1

5.6e-88

88.14

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H+ TS AKRRRP P    S  DDD++KP+ KPAPP ALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVNPRRS+SSSRSDVPFRGREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

A0A6J1DBZ8 uncharacterized protein At1g27050

4.4e-93

89.69

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MSRKRDKPYPS HV TSV+KRRRPLPPV S  EDDD+DKP+PKPAPPPALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGRGN+LASTIVNPR+SD SSR DVPFR REV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

A0A6J1GYQ1 uncharacterized protein At1g27050

2.4e-91

89.69

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP     EDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD PFRGREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

A0A6J1KFA1 uncharacterized protein At1g27050

4.9e-92

90.21

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD PFRGREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

5.7e-53

52.43

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MSRKRDKPY + H    ++KRRRP  P  SS  D+ +DKP+ KP PPPALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----------SSSRSDVPFRGREVI
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  +          SS  +    + R ++
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----------SSSRSDVPFRGREVI

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

4.0e-54

52.43

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MSRKRDKPY + H    ++KRRRP  P  SS  D+ +DKP+ KP PPPALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----------SSSRSDVPFRGREVI
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  +          SS  +    + R ++
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----------SSSRSDVPFRGREVI

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCTCCACGTTCACACCTCCGTCGCTAAGAGGCGGCGCCCTCTGCCGCCGGTACAGTCATCGGCGGAAGACGATGATAT
GGACAAGCCCTTGCCGAAGCCTGCGCCACCACCTGCCCTAGTCGTCGTTGACCTACCGTCACACTGTTCAGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCA
TCTCCCGCATCCGGATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCTGCTGATGCTGCCATGGCCGCCGCCCTCGATCCCTCATTCGGCTTCACC
ATTGATTCCAAAAAGGTTCAGGTATTATGGGCTAATGATCCTCAAGTGCAATGGAGACAAGGGATTAACGTTGGTGTCAACAAGAATAAGGAATTGTCATCGAAGCTCTT
GCGGGCAGAAGTGCCTCTGAGCAGACATGGGAGAGGCAATAAGCTTGCTTCAACCATTGTTAACCCCAGAAGAAGTGACAGTTCTTCAAGGTCGGATGTGCCTTTCAGGG
GCAGGGAAGTTATTGCTTATGATGATATTCTCTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFT
IDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

Spg026207 (gene) of Sponge gourd (cylindrica) v1 genome