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Spg026217 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026217
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTrigger_N domain-containing protein
Genome locationscaffold13:14870003..14872668
RNA-Seq ExpressionSpg026217
SyntenySpg026217
Gene Ontology termsGO:0000413 - protein peptidyl-prolyl isomerization (biological process)
GO:0015031 - protein transport (biological process)
GO:0043335 - protein unfolding (biological process)
GO:0051083 - 'de novo' cotranslational protein folding (biological process)
GO:0061077 - chaperone-mediated protein folding (biological process)
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
GO:0044183 - protein folding chaperone (molecular function)
InterPro domainsIPR005215 - Trigger factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025385.1 Something about silencing protein 10 [Cucurbita argyrosperma subsp. argyrosperma]7.5e-2495.38Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE

XP_008460020.1 PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo]3.2e-2773.68Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN
        VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENINVKD KV+T+QTADELK+LFNPGK+FGFNAILELESA++ E+
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN

XP_011656737.1 uncharacterized protein LOC101212225 [Cucumis sativus]1.5e-2773.68Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN
        VPKSFLLEVLGKDRVTKF+IQEILNSTM DYAKK                ENINVKDKKVST+QTADELK+LFNPGK+FGFNAILELESA++ E+
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN

XP_022155406.1 uncharacterized protein LOC111022553 [Momordica charantia]4.0e-2573.33Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESA
        VPKSFLLEVLG++RVTKFVIQEILNSTMADYAKK                EN+NVKDKKV+T+QTADELK+LF PGK+FGFNAILELESA
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESA

XP_038906537.1 uncharacterized protein LOC120092511 [Benincasa hispida]4.2e-2773.68Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN
        VPKSFLLEVLGKDRV KFVIQEILNSTMADYAKK                ENINVKDKKV+T+QTADELK+LF+PGK+FGFNAILELESA++ EN
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN

TrEMBL top hitse value%identityAlignment
A0A0A0K988 Trigger_N domain-containing protein7.0e-2873.68Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN
        VPKSFLLEVLGKDRVTKF+IQEILNSTM DYAKK                ENINVKDKKVST+QTADELK+LFNPGK+FGFNAILELESA++ E+
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN

A0A1S3CBN2 uncharacterized protein LOC1034989591.6e-2773.68Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN
        VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENINVKD KV+T+QTADELK+LFNPGK+FGFNAILELESA++ E+
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN

A0A6J1DRL2 uncharacterized protein LOC1110225531.9e-2573.33Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESA
        VPKSFLLEVLG++RVTKFVIQEILNSTMADYAKK                EN+NVKDKKV+T+QTADELK+LF PGK+FGFNAILELESA
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESA

A0A6J1H7Y4 something about silencing protein 103.6e-2495.38Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE

A0A6J1KVH0 something about silencing protein 103.6e-2495.38Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).1.4e-0731.87Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAA
        +PK  LLE+LG  +V K VI++++NS + DY K+                E++ V  K+++  Q+ ++L+  F PG+ F F+A ++L+ A+
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAA

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).1.4e-0731.87Show/hide
Query:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAA
        +PK  LLE+LG  +V K VI++++NS + DY K+                E++ V  K+++  Q+ ++L+  F PG+ F F+A ++L+ A+
Subjt:  VPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLCLASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAA

AT2G43650.1 Sas10/U3 ribonucleoprotein (Utp) family protein5.0e-1054.55Show/hide
Query:  KRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
        KR+SK      D   +  DDEIDAFH+QRD++PLD+N D  ESDED   PVF+L+
Subjt:  KRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAGAGAAAGAGCCATAAGCAAGACAAGAGGAACTCTAAGAGAAGAAATGTCGATGATGATGCTGCCTCTGAAGATATGGATGATGAAATTGATGCATTTCACAG
GCAGAGGGATGTTATTCCACTTGATATTAACGGTGACGCTCCAGAGTCAGATGAAGATGCTGAGCATCCTGTCTTTAATTTAGAGGTCCCAAAAAGCTTCCTCTTAGAAG
TCCTCGGCAAGGATCGTGTCACAAAGTTTGTCATTCAAGAAATATTAAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTTACCCTCATTGCTTTGCTTCTTATGT
TTAGCTTCAATTTCGGAAAATATAAATGTGAAGGACAAGAAGGTTAGCACAAGCCAAACAGCAGATGAACTGAAAATGTTGTTTAATCCAGGAAAAGATTTTGGTTTCAA
TGCAATACTTGAGCTTGAATCTGCTGCAGAGGTAGAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAAGAGAAAGAGCCATAAGCAAGACAAGAGGAACTCTAAGAGAAGAAATGTCGATGATGATGCTGCCTCTGAAGATATGGATGATGAAATTGATGCATTTCACAG
GCAGAGGGATGTTATTCCACTTGATATTAACGGTGACGCTCCAGAGTCAGATGAAGATGCTGAGCATCCTGTCTTTAATTTAGAGGTCCCAAAAAGCTTCCTCTTAGAAG
TCCTCGGCAAGGATCGTGTCACAAAGTTTGTCATTCAAGAAATATTAAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTTACCCTCATTGCTTTGCTTCTTATGT
TTAGCTTCAATTTCGGAAAATATAAATGTGAAGGACAAGAAGGTTAGCACAAGCCAAACAGCAGATGAACTGAAAATGTTGTTTAATCCAGGAAAAGATTTTGGTTTCAA
TGCAATACTTGAGCTTGAATCTGCTGCAGAGGTAGAAAATTGA
Protein sequenceShow/hide protein sequence
MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASLPSLLCFLC
LASISENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN