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Spg026220 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026220
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsomething about silencing protein 10
Genome locationscaffold13:14881092..14887370
RNA-Seq ExpressionSpg026220
SyntenySpg026220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592973.1 Something about silencing protein 10, partial [Cucurbita argyrosperma subsp. sororia]3.6e-2470.41Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADELKMLFNPGKDFGFNA
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNL E ++ +D+     +  DE  +     +D GF A
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADELKMLFNPGKDFGFNA
KAG7025385.1 Something about silencing protein 10 [Cucurbita argyrosperma subsp. argyrosperma]4.7e-2471.43Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADELKMLFNPGKDFGFNA
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE    V D+     +  DE  +     +D GF A
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADELKMLFNPGKDFGFNA
XP_022960128.1 something about silencing protein 10 [Cucurbita moschata]4.7e-2478.31Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNL E ++ +D+     +  DE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
XP_023515008.1 something about silencing protein 10 isoform X1 [Cucurbita pepo subsp. pepo]3.6e-2478.31Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNL E ++ +D+     +  DE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
XP_023515010.1 something about silencing protein 10 isoform X2 [Cucurbita pepo subsp. pepo]4.7e-2479.52Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE    V D+     +  DE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
TrEMBL top hitse value%identityAlignment
A0A1S3CBM7 something about silencing protein 10 isoform X21.5e-2086.15Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
        MGKRKS+KQDK+NSKRR  +DDAASEDMDDEIDAFHRQRDVIPLDINGD+ ESD+DAE PVFNLE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
A0A1S3CCS3 something about silencing protein 10 isoform X11.5e-2086.15Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
        MGKRKS+KQDK+NSKRR  +DDAASEDMDDEIDAFHRQRDVIPLDINGD+ ESD+DAE PVFNLE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
A0A5A7TE39 Something about silencing protein 10 isoform X14.5e-2084.62Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
        MGKRKS+KQ+K+NSKRR  +DDAASEDMDDEIDAFHRQRDVIPLDINGD+ ESD+DAE PVFNLE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE
A0A6J1H7Y4 something about silencing protein 102.3e-2478.31Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNL E ++ +D+     +  DE
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
A0A6J1KVH0 something about silencing protein 102.3e-2471.43Show/hide
Query:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADELKMLFNPGKDFGFNA
        MGKRKSHKQ+KRNSKRR  DDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLE    V D+     +  DE  +     +D GF A
Subjt:  MGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADELKMLFNPGKDFGFNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G43650.1 Sas10/U3 ribonucleoprotein (Utp) family protein2.4e-1047.95Show/hide
Query:  KRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE
        KR+SK      D   +  DDEIDAFH+QRD++PLD+N D  ESDED   PVF+L+    V D+      T DE
Subjt:  KRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEENINVKDKKVSTSQTADE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCGCGCCACTTCTTCTCCTTCACGACGTTTCCTCCTCCGTTTCAGCAGCTCAGCGTCGCCGCTGCCTCTCTACCGTTCAGTGCTGCCGCCGGCGTCGTCTTTCTT
CCGTTCGTGGAGCCGCAGCCTCCCTCGTAGCGGTTTTGCACTGATTTTCCAGTCTCTTGTTGGTACTGGTTTTCTCCCGATCTCCATCTACTTGGGAGGGTACAAATTGA
ACAGAGAAGCAAACTTTTCATGGATCAATTTGATTAAAAGCACTGTTTTGGAGACTTTGATCGACTTGGGTGATCAACAACTATATCTTCGAGAGTTTGAGCTCGAAGAT
ATAGTCAAGGAGCATTCCAAAAATGCGAGTCTATCTTTTGGTTTGGGAGGAGAGATTTTCGTTGTTGAAGCCCTGATCCTTCTGTCGGGTTCTCATAAGGTGGAGGAAGA
TTTGGATCATATTCTTTGGAGCTGTGATTTTGTTCGCTCCCGTTGGGACCTTTTCTTTGATGCGTTTGGGCAGCAACGGATCAACTACCTAGATCTGAGAGTGTCAAGAG
TTCCTCCTCAATCTGACCCTCCATGGCAAAGGAAGATTTTTATGATCATCCCAAGACTTGTCATCGAGACCTCTTTCGAACATGCAGCATCAGAGTTAAGCTTCCAAAAT
ACGCCATTCGGAGGAGACCACCGTCGATTTCTGTCCAAAGAAGAAGAATCCTCATTACTTTTGATCCGCATGCCAGGCAGGAACCTTAAGCTTTTAGACCTGATAAATCA
ACAACCCATCTTACTGTTCTTTGGAGATAGAGAAATTTTAACTGATTTGCAGCTAATCATGGGCAAGAGAAAGAGCCATAAGCAAGACAAGAGGAACTCTAAGAGAAGAA
ATGTCGATGATGATGCTGCCTCTGAAGATATGGATGATGAAATTGATGCATTTCACAGGCAGAGGGATGTTATTCCACTTGATATTAACGGTGACGCTCCAGAGTCAGAT
GAAGATGCTGAGCATCCTGTCTTTAATTTAGAGGAAAATATAAATGTGAAGGACAAGAAGGTTAGCACAAGCCAAACAGCAGATGAACTGAAAATGTTGTTTAATCCAGG
AAAAGATTTTGGTTTCAATGCAATACTTGAGCTTGAATCTGCTGCAGAGGTAGAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCGCGCCACTTCTTCTCCTTCACGACGTTTCCTCCTCCGTTTCAGCAGCTCAGCGTCGCCGCTGCCTCTCTACCGTTCAGTGCTGCCGCCGGCGTCGTCTTTCTT
CCGTTCGTGGAGCCGCAGCCTCCCTCGTAGCGGTTTTGCACTGATTTTCCAGTCTCTTGTTGGTACTGGTTTTCTCCCGATCTCCATCTACTTGGGAGGGTACAAATTGA
ACAGAGAAGCAAACTTTTCATGGATCAATTTGATTAAAAGCACTGTTTTGGAGACTTTGATCGACTTGGGTGATCAACAACTATATCTTCGAGAGTTTGAGCTCGAAGAT
ATAGTCAAGGAGCATTCCAAAAATGCGAGTCTATCTTTTGGTTTGGGAGGAGAGATTTTCGTTGTTGAAGCCCTGATCCTTCTGTCGGGTTCTCATAAGGTGGAGGAAGA
TTTGGATCATATTCTTTGGAGCTGTGATTTTGTTCGCTCCCGTTGGGACCTTTTCTTTGATGCGTTTGGGCAGCAACGGATCAACTACCTAGATCTGAGAGTGTCAAGAG
TTCCTCCTCAATCTGACCCTCCATGGCAAAGGAAGATTTTTATGATCATCCCAAGACTTGTCATCGAGACCTCTTTCGAACATGCAGCATCAGAGTTAAGCTTCCAAAAT
ACGCCATTCGGAGGAGACCACCGTCGATTTCTGTCCAAAGAAGAAGAATCCTCATTACTTTTGATCCGCATGCCAGGCAGGAACCTTAAGCTTTTAGACCTGATAAATCA
ACAACCCATCTTACTGTTCTTTGGAGATAGAGAAATTTTAACTGATTTGCAGCTAATCATGGGCAAGAGAAAGAGCCATAAGCAAGACAAGAGGAACTCTAAGAGAAGAA
ATGTCGATGATGATGCTGCCTCTGAAGATATGGATGATGAAATTGATGCATTTCACAGGCAGAGGGATGTTATTCCACTTGATATTAACGGTGACGCTCCAGAGTCAGAT
GAAGATGCTGAGCATCCTGTCTTTAATTTAGAGGAAAATATAAATGTGAAGGACAAGAAGGTTAGCACAAGCCAAACAGCAGATGAACTGAAAATGTTGTTTAATCCAGG
AAAAGATTTTGGTTTCAATGCAATACTTGAGCTTGAATCTGCTGCAGAGGTAGAAAATTGA
Protein sequenceShow/hide protein sequence
MVRATSSPSRRFLLRFSSSASPLPLYRSVLPPASSFFRSWSRSLPRSGFALIFQSLVGTGFLPISIYLGGYKLNREANFSWINLIKSTVLETLIDLGDQQLYLREFELED
IVKEHSKNASLSFGLGGEIFVVEALILLSGSHKVEEDLDHILWSCDFVRSRWDLFFDAFGQQRINYLDLRVSRVPPQSDPPWQRKIFMIIPRLVIETSFEHAASELSFQN
TPFGGDHRRFLSKEEESSLLLIRMPGRNLKLLDLINQQPILLFFGDREILTDLQLIMGKRKSHKQDKRNSKRRNVDDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESD
EDAEHPVFNLEENINVKDKKVSTSQTADELKMLFNPGKDFGFNAILELESAAEVEN