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Spg026224 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026224
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:14873442..14875092
RNA-Seq ExpressionSpg026224
SyntenySpg026224
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO72757.1 hypothetical protein CCACVL1_17615 [Corchorus capsularis]3.5e-0842.7Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFN
        RWSPP    WK+N+DAA  K++ +  LG + R+FEG+V+    K +    +   A L+AI  GL+L  S G    V+ESDC LAI   N
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFN

XP_018815747.1 uncharacterized protein LOC108987311 [Juglans regia]5.1e-0734.95Show/hide
Query:  SSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVV
        S +LD N +W PP     KLN+D A   ++S + +G+I R+ +GKV++  S    V  +    +L  IL GL+L I +G + L+VESD  L++     + 
Subjt:  SSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVV

Query:  DPL
        +P+
Subjt:  DPL

XP_023888246.1 uncharacterized protein LOC112000364 [Quercus suber]7.9e-0835.29Show/hide
Query:  LDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVVDPL
        + +++ WSPP   ++K+N DAA  KE     +G++ RN++G++M   SK ++  L A  A+  A   G+ L   LG   ++VE D QL I   N V  P 
Subjt:  LDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVVDPL

Query:  LP
        +P
Subjt:  LP

XP_024037110.1 uncharacterized protein LOC112097050 [Citrus clementina]5.1e-0740.45Show/hide
Query:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNK
        W PP+   +KLN+DAA  KE  +T LG I RN +G VM   +       +  IA+  AILEGLKL   +  +  ++ESD +  +NF  K
Subjt:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNK

XP_040996092.1 LOW QUALITY PROTEIN: uncharacterized protein LOC121242268 [Juglans microcarpa x Juglans regia]6.4e-1043.01Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVVD
        RWSPP+    KLN D A   E++ TSLG I RN  G V++  S+A  V+LE    +  A+L GL+L +++G + LV+ESDC   +   NKV +
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVVD

TrEMBL top hitse value%identityAlignment
A0A1R3HQR7 Ribonuclease H1.7e-0842.7Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFN
        RWSPP    WK+N+DAA  K++ +  LG + R+FEG+V+    K +    +   A L+AI  GL+L  S G    V+ESDC LAI   N
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFN

A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)2.5e-0740.45Show/hide
Query:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNK
        W PP+   +KLN+DAA  KE  +T LG I RN +G VM   +       +  IA+  AILEGLKL   +  +  ++ESD +  +NF  K
Subjt:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNK

A0A2I4E8M5 uncharacterized protein LOC1089873112.5e-0734.95Show/hide
Query:  SSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVV
        S +LD N +W PP     KLN+D A   ++S + +G+I R+ +GKV++  S    V  +    +L  IL GL+L I +G + L+VESD  L++     + 
Subjt:  SSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVV

Query:  DPL
        +P+
Subjt:  DPL

A0A6J1BQ49 uncharacterized protein LOC1110047865.5e-0744.33Show/hide
Query:  SNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAI
        S + SS    + RW PP     K+NSDAAC    + T LG+I R+  G ++V  S  L + L    A++  ILE LKL  S   T LVVESDCQ AI
Subjt:  SNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAI

A0A6J1DJL6 uncharacterized protein LOC1110217113.2e-0736.19Show/hide
Query:  NEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFN
        N + +  D N  W+PP+  + K+N D AC    S T +G++C+N +G+++V   + LDV  E    +  AILEGL L   L    + V+SD Q +IN  +
Subjt:  NEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFN

Query:  KVVDP
        +  DP
Subjt:  KVVDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGATCAAAAGTAATGAGGATTCTTCTTCTTTGGACAGAAATCGACGGTGGTCTCCTCCGAATGGCGTATTTTGGAAGCTTAACTCTGATGCTGCATGTTCGAAAGA
GGTCTCGATGACAAGTCTTGGGATGATCTGCAGAAATTTTGAGGGTAAAGTTATGGTAGTTGCGTCAAAGGCTTTGGACGTGAGGTTGGAGGCCCATATTGCTCAATTAT
GGGCCATCCTTGAAGGTTTAAAGCTGGTTATTTCATTGGGCTGCACTATGTTAGTTGTGGAGTCCGATTGTCAACTTGCTATCAATTTCTTCAATAAGGTAGTTGATCCG
TTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACGGGAGCGAACAAAATCACAGCTCCAAAGAATATGATCCAAATCTTCCTCCACCTTCTGACAAAGGATGGAACAAA
AGGGGCCAAACAAATGGGCATTCCTTCTCAAGAGCCTACCAAAGATTGTGGTATCAAGTTAGTTGGTCCAGACTTTTGCAAAATCTTTTGGAATGTCTACGTGCACAGTG
ATGTGGATATTGTCCTTCCTGAACTCTCATTAAGTGAGTGGATCAAGGGAAAGGCTAGGTTCACGTGGAAGAGTGCGGCTAGAACTATTCCTTTGGTCTCTTTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGATCAAAAGTAATGAGGATTCTTCTTCTTTGGACAGAAATCGACGGTGGTCTCCTCCGAATGGCGTATTTTGGAAGCTTAACTCTGATGCTGCATGTTCGAAAGA
GGTCTCGATGACAAGTCTTGGGATGATCTGCAGAAATTTTGAGGGTAAAGTTATGGTAGTTGCGTCAAAGGCTTTGGACGTGAGGTTGGAGGCCCATATTGCTCAATTAT
GGGCCATCCTTGAAGGTTTAAAGCTGGTTATTTCATTGGGCTGCACTATGTTAGTTGTGGAGTCCGATTGTCAACTTGCTATCAATTTCTTCAATAAGGTAGTTGATCCG
TTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACGGGAGCGAACAAAATCACAGCTCCAAAGAATATGATCCAAATCTTCCTCCACCTTCTGACAAAGGATGGAACAAA
AGGGGCCAAACAAATGGGCATTCCTTCTCAAGAGCCTACCAAAGATTGTGGTATCAAGTTAGTTGGTCCAGACTTTTGCAAAATCTTTTGGAATGTCTACGTGCACAGTG
ATGTGGATATTGTCCTTCCTGAACTCTCATTAAGTGAGTGGATCAAGGGAAAGGCTAGGTTCACGTGGAAGAGTGCGGCTAGAACTATTCCTTTGGTCTCTTTGGATTGA
Protein sequenceShow/hide protein sequence
MRIKSNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVVASKALDVRLEAHIAQLWAILEGLKLVISLGCTMLVVESDCQLAINFFNKVVDP
LLPKRIKEKVPTGANKITAPKNMIQIFLHLLTKDGTKGAKQMGIPSQEPTKDCGIKLVGPDFCKIFWNVYVHSDVDIVLPELSLSEWIKGKARFTWKSAARTIPLVSLD