CuGenDBv2

Gene ID	Spg026225
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	scaffold13:14447996..14449373
RNA-Seq Expression	Spg026225
Synteny	Spg026225
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.6e-52

31.31

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Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        R+TL+ +TL S+  Y + +FK P+ + ++I+   R+FLW G  +   + L+ WN++ +PK  GGLG+     +N AL  KWLW+F  E   LWKR I++K
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSPSLA----------NQDLKVAKA---------WDDSILLCSFLPR----------------------------RPLLSRE
        Y    M   PS  KFSS+ SP  A          N   KV            W+ +  L   +PR                            RPL   E
Subjt:  YSTHNMEIIPSRSKFSSSRSPSLA----------NQDLKVAKA---------WDDSILLCSFLPR----------------------------RPLLSRE

Query:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR
           W ++ ++ P P+ +RG+    WN + + +F TAS +    +E   S  +  P +   LW    PKK KFFIWT++H  INTADRLQ    N  L+P 
Subjt:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR

Query:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWK
         C +C+   E ++H+F HC  +   W    + +  +  TP+   SL +   +     Q+        A ++W +W  RN+RIFK    A P   W+
Subjt:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWK

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

8.8e-53

31.77

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Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        R+TL+ +TL S+  Y L +FK P+ + ++I+   R+FLW G  +   + L+ WN+V +PK  GGLG+     +N AL  KWLW+F  E   LWKR I++K
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSPSLA-----------------------------------------------NQDLKVAKAWDDSILLCSFLPRRPLLSRE
        Y    M   PSR K+SS+ SP  A                                               N+   V   W+ S+   +    RPL   E
Subjt:  YSTHNMEIIPSRSKFSSSRSPSLA-----------------------------------------------NQDLKVAKAWDDSILLCSFLPRRPLLSRE

Query:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR
           W ++ ++ P P+  RG     W  + + +F TAS +    SE S+S  +  P +   LW    PKK KFFIWT++H  INTADRLQ    N  L+P 
Subjt:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR

Query:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFK
         C +C+   E ++H+F HC  +   W    + +  +  TP+   SL +   +    TQ+        A ++W +W  RN+RIFK
Subjt:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFK

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.2e-52

32.29

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Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        R+TL+ +TL S+  Y L +FK P+ + ++I+   R+FLW G  +   + L+ WN+V +PK  GGLG+     +N AL  KWLW+F  E   LWKR I++K
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSP--------------------------------------SLA---------NQDLKVAKAWDDSILLCSFLPRRPLLSRE
        Y    M   PSR K+SS+ SP                                      SLA         N+   V   W+ S+   +    RPL   E
Subjt:  YSTHNMEIIPSRSKFSSSRSP--------------------------------------SLA---------NQDLKVAKAWDDSILLCSFLPRRPLLSRE

Query:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR
           W ++ ++ P P+  RG     W  + + +F TAS +    SE S+S  +  P +   LW    PKK KFFIWT++H  INTADRLQ    N  L+P 
Subjt:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR

Query:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFK
         C +C+   E ++H+F HC  +   W    + +  +  TP+   SL +   +    TQ+        A ++W +W  RN+RIFK
Subjt:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFK

KAA0067274.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.4e-50

35.09

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Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        RLTL++A+L S+ TY L  FKAP  V K I+K  R FLW G+  K   HL++W    +PK   GLG+ K + +N  L  KWLWR+  E  SLWK+ I AK
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSPSLANQDLKVAKAWDDSILLCSFLPRRPLLSRESIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDS
        Y+ ++   IP  + F +   P        V + WD S    +  PRRPL  RE+  WE +  + P    +RG     W      V++ ASA+ L + E S
Subjt:  YSTHNMEIIPSRSKFSSSRSPSLANQDLKVAKAWDDSILLCSFLPRRPLLSRESIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDS

Query:  SSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPRCCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLC
                + L +LW   IP+K KFFIWT++H+++NT D +Q    +  LNP  C+ C + +E ++H+F  C  A  FW  + S  GI     ++   LC
Subjt:  SSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPRCCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLC

Query:  EETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSA
               G   +         A +WT+W  RN+ +F    S+
Subjt:  EETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSA

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

4.1e-50

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Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        RLTL++A+L S+ TY L  FKAP  V K I+K  R FLW G+  K   HL++WN   +PK  GGLG+ K + +N AL  KWLWR+  E  SLWK+ I AK
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSP----------------------------------------------SLAN-QDLKVAKAWDDSILLCSFLPRRPLLSRE
        Y+ ++   IP   + SS+ SP                                              +L+N Q   V + WD      +  PRRPL  RE
Subjt:  YSTHNMEIIPSRSKFSSSRSP----------------------------------------------SLAN-QDLKVAKAWDDSILLCSFLPRRPLLSRE

Query:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR
           W+ +  + P    +RG     WN      +T ASA+ + + E S        + L +LW   IP+K KFFIWT++H+++NT D +Q    + +LNP 
Subjt:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR

Query:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMG---IHFPTPSLANSLCEETFTH-KGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWK
         C+ C + +E ++H+F  C  A   W  + S  G   ++     L   LC +T  + K I    S I     A +WT+W  RN+ IF +  S+  L  W+
Subjt:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMG---IHFPTPSLANSLCEETFTH-KGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

1.2e-52

31.31

Show/hide

Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        R+TL+ +TL S+  Y + +FK P+ + ++I+   R+FLW G  +   + L+ WN++ +PK  GGLG+     +N AL  KWLW+F  E   LWKR I++K
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSPSLA----------NQDLKVAKA---------WDDSILLCSFLPR----------------------------RPLLSRE
        Y    M   PS  KFSS+ SP  A          N   KV            W+ +  L   +PR                            RPL   E
Subjt:  YSTHNMEIIPSRSKFSSSRSPSLA----------NQDLKVAKA---------WDDSILLCSFLPR----------------------------RPLLSRE

Query:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR
           W ++ ++ P P+ +RG+    WN + + +F TAS +    +E   S  +  P +   LW    PKK KFFIWT++H  INTADRLQ    N  L+P 
Subjt:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR

Query:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWK
         C +C+   E ++H+F HC  +   W    + +  +  TP+   SL +   +     Q+        A ++W +W  RN+RIFK    A P   W+
Subjt:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWK

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

4.3e-53

31.77

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Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        R+TL+ +TL S+  Y L +FK P+ + ++I+   R+FLW G  +   + L+ WN+V +PK  GGLG+     +N AL  KWLW+F  E   LWKR I++K
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSPSLA-----------------------------------------------NQDLKVAKAWDDSILLCSFLPRRPLLSRE
        Y    M   PSR K+SS+ SP  A                                               N+   V   W+ S+   +    RPL   E
Subjt:  YSTHNMEIIPSRSKFSSSRSPSLA-----------------------------------------------NQDLKVAKAWDDSILLCSFLPRRPLLSRE

Query:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR
           W ++ ++ P P+  RG     W  + + +F TAS +    SE S+S  +  P +   LW    PKK KFFIWT++H  INTADRLQ    N  L+P 
Subjt:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR

Query:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFK
         C +C+   E ++H+F HC  +   W    + +  +  TP+   SL +   +    TQ+        A ++W +W  RN+RIFK
Subjt:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFK

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

5.6e-53

32.29

Show/hide

Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        R+TL+ +TL S+  Y L +FK P+ + ++I+   R+FLW G  +   + L+ WN+V +PK  GGLG+     +N AL  KWLW+F  E   LWKR I++K
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSP--------------------------------------SLA---------NQDLKVAKAWDDSILLCSFLPRRPLLSRE
        Y    M   PSR K+SS+ SP                                      SLA         N+   V   W+ S+   +    RPL   E
Subjt:  YSTHNMEIIPSRSKFSSSRSP--------------------------------------SLA---------NQDLKVAKAWDDSILLCSFLPRRPLLSRE

Query:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR
           W ++ ++ P P+  RG     W  + + +F TAS +    SE S+S  +  P +   LW    PKK KFFIWT++H  INTADRLQ    N  L+P 
Subjt:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR

Query:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFK
         C +C+   E ++H+F HC  +   W    + +  +  TP+   SL +   +    TQ+        A ++W +W  RN+RIFK
Subjt:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFK

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein

2.0e-50

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Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        RLTL++A+L S+ TY L  FKAP  V K I+K  R FLW G+  K   HL++WN   +PK  GGLG+ K + +N AL  KWLWR+  E  SLWK+ I AK
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSP----------------------------------------------SLAN-QDLKVAKAWDDSILLCSFLPRRPLLSRE
        Y+ ++   IP   + SS+ SP                                              +L+N Q   V + WD      +  PRRPL  RE
Subjt:  YSTHNMEIIPSRSKFSSSRSP----------------------------------------------SLAN-QDLKVAKAWDDSILLCSFLPRRPLLSRE

Query:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR
           W+ +  + P    +RG     WN      +T ASA+ + + E S        + L +LW   IP+K KFFIWT++H+++NT D++Q    + +LNP 
Subjt:  SIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPR

Query:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPS---LANSLCEETFTH-KGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWK
         C+ C + +E ++H+F  C  A   W  + S  G    T +   L   LC ++  + K I    S I     A +WT+W  RN+ IF +  S+  L  W+
Subjt:  CCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPS---LANSLCEETFTH-KGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWK

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein

6.8e-51

35.09

Show/hide

Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        RLTL++A+L S+ TY L  FKAP  V K I+K  R FLW G+  K   HL++W    +PK   GLG+ K + +N  L  KWLWR+  E  SLWK+ I AK
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNMEIIPSRSKFSSSRSPSLANQDLKVAKAWDDSILLCSFLPRRPLLSRESIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDS
        Y+ ++   IP  + F +   P        V + WD S    +  PRRPL  RE+  WE +  + P    +RG     W      V++ ASA+ L + E S
Subjt:  YSTHNMEIIPSRSKFSSSRSPSLANQDLKVAKAWDDSILLCSFLPRRPLLSRESIAWEDLSSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDS

Query:  SSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPRCCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLC
                + L +LW   IP+K KFFIWT++H+++NT D +Q    +  LNP  C+ C + +E ++H+F  C  A  FW  + S  GI     ++   LC
Subjt:  SSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPRCCVLCHNHSETLDHIFTHCAIASGFWQSFHSAMGIHFPTPSLANSLC

Query:  EETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSA
               G   +         A +WT+W  RN+ +F    S+
Subjt:  EETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSA

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.9e-22

24.81

Show/hide

Query:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK
        RLTL +A L S+  + +     PQ +  R+D++ R+FLW     K   HLV W+KV +PK  GGLGV   +  N AL  K  WR  QE  SLW   +  K
Subjt:  RLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHLVSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAK

Query:  YSTHNME----IIPSRSKFSSSRSPSLANQDL------------KVAKAWDDSILLCSFLPRRPLLSR---------ESIAWEDL---------------
        Y    +     +IP  S  S+ RS ++  +D+            +  + W D      ++  +PLL           +++  +DL               
Subjt:  YSTHNME----IIPSRSKFSSSRSPSLANQDL------------KVAKAWDDSILLCSFLPRRPLLSR---------ESIAWEDL---------------

Query:  --------SSTFPVPMLSRGNDIIRWNHHVDGVFTTASA-RLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALN
                     + +++   D + W    DG F+  SA  +L   E     +       + LW   +P++VK F+W V ++ + T +      R     
Subjt:  --------SSTFPVPMLSRGNDIIRWNHHVDGVFTTASA-RLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALN

Query:  PRCCVLCHNHSETLDHIFTHCAIASGFW---------QSFHSAMGIHFPTPSLAN-SLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIF
           C +C    E++ H+   C    G W         Q F S     +   +L + S CE+            P   IFA ++W  W  R   IF
Subjt:  PRCCVLCHNHSETLDHIFTHCAIASGFW---------QSFHSAMGIHFPTPSLAN-SLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIF

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCGTCAGAGCGTGCCAAGTGGCTTCCAAGTGGGGTTGCTCTTATGTTTCTCTTCCAATGTCATACCTGGGTGCTTCTCTTGGAGATAAACCTTCAAAGACTTCTTTT
TGGAATCCGGTTATTGACAAAATTGATGGTAAACTTGACAATTGGCGCTTTTCATGCATTTCTAAAGGTGCGATTAACCCTTGTCCAAGCAACTCTTGGTAGTATTACCA
CTTACATGCTCTTTATCTTCAAAGCCCCCCAACCAGTTTGTAAAAGGATTGATAAAATTATTAGATCTTTTCTTTGGACTGGCAATGGTTCTAAAGATGGCCTTCATTTG
GTTAGTTGGAATAAGGTGGCAGCTCCAAAAAATTCTGGTGGTCTAGGCGTCTTCAAGACTCGAGTTTCCAACAACGCGCTTCAAATTAAATGGCTTTGGAGATTTTTCCA
AGAAGATTGTTCGTTGTGGAAGCGTTTTATATTGGCAAAGTACTCAACTCACAACATGGAAATTATTCCTTCTCGATCAAAATTCTCTAGCTCAAGATCGCCTAGCCTTG
CTAATCAAGATCTAAAGGTGGCAAAAGCTTGGGACGATAGTATTTTGCTTTGTTCTTTTCTTCCTAGAAGGCCTTTGCTGAGTAGGGAATCCATAGCTTGGGAGGATCTA
TCGTCAACTTTTCCGGTGCCAATGCTCTCTCGGGGAAATGATATTATTCGGTGGAACCATCATGTAGATGGAGTTTTCACAACTGCTTCTGCTCGTCTTCTCTTCTGGTC
TGAGGATTCCTCTTCGACTGTTCATGTTGATCCTCAGGTCCTATCGAACCTTTGGAGTGACTTAATCCCGAAGAAAGTCAAATTTTTCATATGGACAGTGTTGCATCGAA
GGATCAATACGGCGGATAGATTGCAATTGGTTTTTAGGAATTCTGCTCTCAATCCACGCTGCTGCGTCCTGTGTCACAACCACTCTGAGACCTTAGACCACATCTTCACC
CATTGTGCTATTGCTTCAGGCTTTTGGCAATCGTTCCATAGTGCCATGGGTATCCATTTTCCGACTCCGTCTTTGGCTAATAGTCTCTGTGAGGAGACCTTTACACATAA
GGGTATTACTCAAAGAGCTTCTCCTATTCATGTTATTTTTGCAGCGGTCATGTGGACTTTGTGGACGGTGCGAAATTCCCGCATTTTCAAAAACATCTCTTCCGCCCTAC
CTCTCAAATTTTGGAAGATATAA

mRNA sequence

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Protein sequence

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MPSERAKWLPSGVALMFLFQCHTWVLLLEINLQRLLFGIRLLTKLMVNLTIGAFHAFLKVRLTLVQATLGSITTYMLFIFKAPQPVCKRIDKIIRSFLWTGNGSKDGLHL
VSWNKVAAPKNSGGLGVFKTRVSNNALQIKWLWRFFQEDCSLWKRFILAKYSTHNMEIIPSRSKFSSSRSPSLANQDLKVAKAWDDSILLCSFLPRRPLLSRESIAWEDL
SSTFPVPMLSRGNDIIRWNHHVDGVFTTASARLLFWSEDSSSTVHVDPQVLSNLWSDLIPKKVKFFIWTVLHRRINTADRLQLVFRNSALNPRCCVLCHNHSETLDHIFT
HCAIASGFWQSFHSAMGIHFPTPSLANSLCEETFTHKGITQRASPIHVIFAAVMWTLWTVRNSRIFKNISSALPLKFWKI

Spg026225 (gene) of Sponge gourd (cylindrica) v1 genome