; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026248 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026248
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:14471401..14480098
RNA-Seq ExpressionSpg026248
SyntenySpg026248
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4264619.1 unnamed protein product [Prunus armeniaca]6.2e-2140.15Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACELST--------VADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S +   DR++WH +  G+Y+VKS Y+ A EL +           +S  R G+R+WK IWEL  + K+++F+ R C+N+LAV  NL +RGM VD  C SC 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACELST--------VADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSF
           E+V H+L +C   R FWF   +QLD    +  +F
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSF

CAB4269469.1 unnamed protein product [Prunus armeniaca]2.5e-2236.69Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S W  +DR+VWH +  G YSV++GY+ A  L         T  + S G   ++ WK IW L    K++ FV R+C+N LAV  NL RR + VDN C  C 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQNKSSGPGHRNLRREVHEEPNGVPILW
         E E+  H+   CE  R FWFGS +QLD+S+   + F    +        H+N +  +     G+  LW
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQNKSSGPGHRNLRREVHEEPNGVPILW

CAB4273082.1 unnamed protein product [Prunus armeniaca]9.5e-2227.19Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S W   D+ VWH++  G Y+V+SGY  A  L            +SS G   +R+WK IW L    K++ F+ + C+N LAV  NL  RG+ V+  C  C 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQ--NKSSGPGHRN-----------------------------------LRREVHE---
         E E+  HV  +CE  R  WF S +QLD      + F    E    K     H N                                      +VHE   
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQ--NKSSGPGHRN-----------------------------------LRREVHE---

Query:  ----------------------------EPNGVPILWTGAAWNKESLAMGLGWFLCWPDS---NASGEGSCRGQNSLNSLHAEGNALLWGLERAHSRGLR
                                     P GV  +   AAW  ++   G+GW +   D     A G+G  RG    ++L  E  A+   L      GL 
Subjt:  ----------------------------EPNGVPILWTGAAWNKESLAMGLGWFLCWPDS---NASGEGSCRGQNSLNSLHAEGNALLWGLERAHSRGLR

Query:  KLGVRTDSLRLVKIVNGEEACPLDLVPIWERIRDMHGKFAHC
        KL V +DSL++++++ GE    + +  I   I+ + G+F HC
Subjt:  KLGVRTDSLRLVKIVNGEEACPLDLVPIWERIRDMHGKFAHC

XP_010495306.1 PREDICTED: uncharacterized protein LOC104772378 [Camelina sativa]1.1e-2029.34Show/hide
Query:  LEDRVVWHHSDSGVYSVKSGYQSA-CELSTVADSSG-GRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCHMEMETVNHVL
        L+D   WH + SG Y+VKSGY++A   +S    + G G     +  ++W++ C  K+++F+ +     + VNANL RRG+  +  CT C  E+ET+NH +
Subjt:  LEDRVVWHHSDSGVYSVKSGYQSA-CELSTVADSSG-GRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCHMEMETVNHVL

Query:  LECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQ-NKSSGPGH---------------RNLR--REVHEEPNGVPILWTGAAWNKESLAMGLGWFLCWPDS
          C P R  W  +H+ + S  + S+S  A V+    S+ PG                RN R      E+P  +  +    +W +     G GW       
Subjt:  LECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQ-NKSSGPGH---------------RNLR--REVHEEPNGVPILWTGAAWNKESLAMGLGWFLCWPDS

Query:  NASGEGSCRGQNSLNSLHAEGNALLWGLERAHSRGLRKLGVRTDSLRLVKIVNGEEACP
         +   G+   + SL+ LHAE  A +W +        R +   TDS  LVK+V+     P
Subjt:  NASGEGSCRGQNSLNSLHAEGNALLWGLERAHSRGLRKLGVRTDSLRLVKIVNGEEACP

XP_021800961.1 uncharacterized protein LOC110745195 [Prunus avium]1.6e-2141.61Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACELST--------VADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S +   DR +WH + +G+++VKSGY+ A EL +           +S  R G+R+WK IWEL    K+++FV R CK+++AV +NL RRG+ VD  C SC 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACELST--------VADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSF
           ETV H+L  C   R FWF   LQLD    +  +F
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSF

TrEMBL top hitse value%identityAlignment
A0A6J5TLT8 Reverse transcriptase domain-containing protein3.0e-2140.15Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACELST--------VADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S +   DR++WH +  G+Y+VKS Y+ A EL +           +S  R G+R+WK IWEL  + K+++F+ R C+N+LAV  NL +RGM VD  C SC 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACELST--------VADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSF
           E+V H+L +C   R FWF   +QLD    +  +F
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSF

A0A6J5U034 Reverse transcriptase domain-containing protein1.2e-2236.69Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S W  +DR+VWH +  G YSV++GY+ A  L         T  + S G   ++ WK IW L    K++ FV R+C+N LAV  NL RR + VDN C  C 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQNKSSGPGHRNLRREVHEEPNGVPILW
         E E+  H+   CE  R FWFGS +QLD+S+   + F    +        H+N +  +     G+  LW
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQNKSSGPGHRNLRREVHEEPNGVPILW

A0A6J5UAY2 Reverse transcriptase domain-containing protein4.6e-2227.19Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S W   D+ VWH++  G Y+V+SGY  A  L            +SS G   +R+WK IW L    K++ F+ + C+N LAV  NL  RG+ V+  C  C 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQ--NKSSGPGHRN-----------------------------------LRREVHE---
         E E+  HV  +CE  R  WF S +QLD      + F    E    K     H N                                      +VHE   
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQ--NKSSGPGHRN-----------------------------------LRREVHE---

Query:  ----------------------------EPNGVPILWTGAAWNKESLAMGLGWFLCWPDS---NASGEGSCRGQNSLNSLHAEGNALLWGLERAHSRGLR
                                     P GV  +   AAW  ++   G+GW +   D     A G+G  RG    ++L  E  A+   L      GL 
Subjt:  ----------------------------EPNGVPILWTGAAWNKESLAMGLGWFLCWPDS---NASGEGSCRGQNSLNSLHAEGNALLWGLERAHSRGLR

Query:  KLGVRTDSLRLVKIVNGEEACPLDLVPIWERIRDMHGKFAHC
        KL V +DSL++++++ GE    + +  I   I+ + G+F HC
Subjt:  KLGVRTDSLRLVKIVNGEEACPLDLVPIWERIRDMHGKFAHC

A0A6J5WGH5 Uncharacterized protein6.6e-2141.98Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S W  +DR+VWH +  G YSV +GY+ A  L            + S G   ++ WK IW L    K++ FV R+C+N LAV  NL RR + VDN C  C 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACEL--------STVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSK
         E E+  H+   CE  R FWFGS +QLD+S+
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSK

A0A6P5RJE2 uncharacterized protein LOC1107451957.8e-2241.61Show/hide
Query:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACELST--------VADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH
        S +   DR +WH + +G+++VKSGY+ A EL +           +S  R G+R+WK IWEL    K+++FV R CK+++AV +NL RRG+ VD  C SC 
Subjt:  SHWRLEDRVVWHHSDSGVYSVKSGYQSACELST--------VADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCH

Query:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSF
           ETV H+L  C   R FWF   LQLD    +  +F
Subjt:  MEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.3e-1332.28Show/hide
Query:  VDTENMSAVRRVQLSIRSHWRLEDRVVWHHSDSGVYSVKSGYQSAC-ELSTVADSSGGRVGQRMWK-EIWELPCSQKVKNFVRRACKNFLAVNANLNRRG
        VD  +   + R+ L   +  +  D+++W+++ +G Y+V+SGY     + ST   +     G    K  IW LP   K+K+F+ RA    LA    L  RG
Subjt:  VDTENMSAVRRVQLSIRSHWRLEDRVVWHHSDSGVYSVKSGYQSAC-ELSTVADSSGGRVGQRMWK-EIWELPCSQKVKNFVRRACKNFLAVNANLNRRG

Query:  MCVDNRCTSCHMEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQNKSS
        M +D  C  CH E E++NH L  C      W  S    DSS  R+Q      E+N S+
Subjt:  MCVDNRCTSCHMEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQNKSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCTTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTGTCCATTAGGTCCCACTGGAGGCTGGAAGACAGGGTGGTGTGGCATCATTCGGACTCTGGTGTGTATTCTGTTAAATCAGGGTACCAGTCAGCCTGCGAACTCTCT
ACAGTGGCTGATTCAAGTGGTGGACGGGTGGGTCAACGCATGTGGAAAGAAATTTGGGAGCTGCCGTGCTCGCAAAAAGTCAAGAATTTTGTCCGGAGAGCGTGCAAAAA
CTTCCTTGCAGTAAATGCTAATTTGAATAGGAGAGGTATGTGTGTGGATAACAGATGCACGAGCTGTCATATGGAGATGGAGACTGTAAATCATGTGTTGTTGGAGTGTG
AGCCAACGAGGGCATTCTGGTTTGGTTCTCATCTTCAGCTGGACTCGAGTAAATATAGGAGCCAGTCTTTTGATGCTATGGTGGAACAAAATAAAAGTAGTGGGCCAGGT
CACCGTAATCTGAGAAGAGAGGTACATGAGGAGCCAAATGGCGTACCAATTTTGTGGACTGGTGCAGCATGGAATAAGGAATCGTTGGCCATGGGACTGGGATGGTTTCT
GTGTTGGCCTGATAGTAACGCGAGTGGAGAAGGTTCTTGCAGAGGGCAAAACAGTCTGAACAGCCTTCATGCTGAAGGCAATGCTCTTCTGTGGGGGCTGGAACGTGCTC
ATAGCAGAGGTCTACGAAAGCTTGGGGTGAGGACGGACTCACTCAGATTGGTCAAGATTGTGAATGGGGAAGAGGCATGTCCGCTGGATCTGGTGCCTATATGGGAAAGG
ATCCGAGATATGCATGGGAAGTTTGCCCACTGTGATCTTTATCGTTGGTTTATTGGAGATTTAGATAACTCAATATGTTCAAAATTTAGTTTCAGCCTTAATCAGTCGTT
CTCGGTGTTCAAGCTTCGGTTCTCAGCCATTTACGCTTCTGTCCAGCGAAGTGACTTAGTTTGGAGTTTAGCTATTCGGAGGTGCTGTCCAGTAGAGATTGAGGCTAGTT
TTCGAGTGGGTCTTTGTGTTGTGTGCTTTATTTGGCTAAGAACAAGGAGAGGTTCGAAAGGAGATTTTGTTTGGGAGGTTGTTGCTTGTGTGGTTACGTTGGTTGCTAAT
TCAGGCGCAGTCTCTAGAGGATGCCTACCTTACCTTCTAGTTGGGAGAGGAATAAGAGGAAATTGGGTAAAGGCAAAGGCGTTCAAGGTGATTGACGGAGTTTGTCGGAT
AGCCATGGGAGACAGTAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCTTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTGTCCATTAGGTCCCACTGGAGGCTGGAAGACAGGGTGGTGTGGCATCATTCGGACTCTGGTGTGTATTCTGTTAAATCAGGGTACCAGTCAGCCTGCGAACTCTCT
ACAGTGGCTGATTCAAGTGGTGGACGGGTGGGTCAACGCATGTGGAAAGAAATTTGGGAGCTGCCGTGCTCGCAAAAAGTCAAGAATTTTGTCCGGAGAGCGTGCAAAAA
CTTCCTTGCAGTAAATGCTAATTTGAATAGGAGAGGTATGTGTGTGGATAACAGATGCACGAGCTGTCATATGGAGATGGAGACTGTAAATCATGTGTTGTTGGAGTGTG
AGCCAACGAGGGCATTCTGGTTTGGTTCTCATCTTCAGCTGGACTCGAGTAAATATAGGAGCCAGTCTTTTGATGCTATGGTGGAACAAAATAAAAGTAGTGGGCCAGGT
CACCGTAATCTGAGAAGAGAGGTACATGAGGAGCCAAATGGCGTACCAATTTTGTGGACTGGTGCAGCATGGAATAAGGAATCGTTGGCCATGGGACTGGGATGGTTTCT
GTGTTGGCCTGATAGTAACGCGAGTGGAGAAGGTTCTTGCAGAGGGCAAAACAGTCTGAACAGCCTTCATGCTGAAGGCAATGCTCTTCTGTGGGGGCTGGAACGTGCTC
ATAGCAGAGGTCTACGAAAGCTTGGGGTGAGGACGGACTCACTCAGATTGGTCAAGATTGTGAATGGGGAAGAGGCATGTCCGCTGGATCTGGTGCCTATATGGGAAAGG
ATCCGAGATATGCATGGGAAGTTTGCCCACTGTGATCTTTATCGTTGGTTTATTGGAGATTTAGATAACTCAATATGTTCAAAATTTAGTTTCAGCCTTAATCAGTCGTT
CTCGGTGTTCAAGCTTCGGTTCTCAGCCATTTACGCTTCTGTCCAGCGAAGTGACTTAGTTTGGAGTTTAGCTATTCGGAGGTGCTGTCCAGTAGAGATTGAGGCTAGTT
TTCGAGTGGGTCTTTGTGTTGTGTGCTTTATTTGGCTAAGAACAAGGAGAGGTTCGAAAGGAGATTTTGTTTGGGAGGTTGTTGCTTGTGTGGTTACGTTGGTTGCTAAT
TCAGGCGCAGTCTCTAGAGGATGCCTACCTTACCTTCTAGTTGGGAGAGGAATAAGAGGAAATTGGGTAAAGGCAAAGGCGTTCAAGGTGATTGACGGAGTTTGTCGGAT
AGCCATGGGAGACAGTAAAAGATGA
Protein sequenceShow/hide protein sequence
MGESGQYADSISLPFWGQDRMGSWEHNRTRWNSLFPDFREADESGVTDTREGLTSRYWSISVDTENMSAVRRVQLSIRSHWRLEDRVVWHHSDSGVYSVKSGYQSACELS
TVADSSGGRVGQRMWKEIWELPCSQKVKNFVRRACKNFLAVNANLNRRGMCVDNRCTSCHMEMETVNHVLLECEPTRAFWFGSHLQLDSSKYRSQSFDAMVEQNKSSGPG
HRNLRREVHEEPNGVPILWTGAAWNKESLAMGLGWFLCWPDSNASGEGSCRGQNSLNSLHAEGNALLWGLERAHSRGLRKLGVRTDSLRLVKIVNGEEACPLDLVPIWER
IRDMHGKFAHCDLYRWFIGDLDNSICSKFSFSLNQSFSVFKLRFSAIYASVQRSDLVWSLAIRRCCPVEIEASFRVGLCVVCFIWLRTRRGSKGDFVWEVVACVVTLVAN
SGAVSRGCLPYLLVGRGIRGNWVKAKAFKVIDGVCRIAMGDSKR